BAC Information

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BAC

Clone NameMSMg01-501A07
Chromosome3 (Build37)
Map Location 154,444,390 - 154,444,872
singlet/doubletsinglet
Overlap genenone
Upstream geneAsb17, Msh4, Rabggtb, Acadm, Slc44a5, LOC100040980, Lhx8, LOC100040810, LOC100040829, Tyw3, Cryz, BC007180
Downstream geneTnni3k, Fpgt, Lrrc44, EG383956, Scp2-ps1, EG668902
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-501A07.T7 (MSMg01no501_a07.b1)MSMg01-501A07.TJ (MSMg01no501_a07.g1)
ACCAG576717AG576718
length700645
length of high quality
(start - end)		642 (55 - 696)---
definitionCHROMAT_FILE: MSMg01no501_a07.b1 PHD_FILE: MSMg01no501_a07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:27:46 2005CHROMAT_FILE: MSMg01no501_a07.g1 PHD_FILE: MSMg01no501_a07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:27:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCTATACGACTCACTATATTCAGAGGATCCGCGGAATTCATGTTTGGTTC
ACCAGAGCTGTGAATTCAAACCTCCTAGGAGAGAGCCCAACTTCAGGTCG
TGTGTGAGAGTACATTTGTACACGTGAGCACAGCGACACACACGCAGAGG
CACTAGTGTGGGGGATCAGAGGACAATCTGGGGAGTCAGTCTTCATCTTC
CACCTTGTTTGAGACAAGGGCTCCTTGCTGCTCGCCACTGCATGTACCAA
ATGAGACAGCCAGCTTGTGTCTGGATAGTCTCCTGTCCCAGACTTCTGTC
TTAACAGATGCTCACTGGAATCAATGATATGTGGATATGTGGATTCTAGG
GATTGGATTCGGGTCTTCATACTTGGCAAATGCTTTATGCATTAAGCCAT
CTCTCCTGTCCCTGTTCCACTGCGATGTCGTGGACGGCAGAGCTAGCTCC
TGCTCACAGAGCTGGCTCCTGCTCACAGCCCAGAGCTGTGGCAAGAGTAG
GCATTGTTGCCTCTTTAAAGCCCAAGGAAAAATGGGAGTGAACACAGAAG
TTTCAGAGACCAAAAAAAAAAATACATCTTTCCTAATTGCTGTGGCTTAT
CCTTATAAAGTAAAACAAATAAGAAGTTTGCTTTCTCTGTTACAGTTGCA
AAAGAACATGGTCTGGCATAACAAGCCATGTTATTTTCTAGGCAGAATGA


NTTGTTAACNNNNNNNNNNGGGGGGGGGGGGTTTCTCTCCCCGNGTGNNN
TNNNNNNNNNNNCCCCCCCNNCNNNNNNNNNNNNNNNNNNNNNNNNNAGG
GGAAGGAGAAGGTNNCCGGNNNCNTGTATGGTAGCTGGGGCGCCGGCCGT
CTCTTTAGTGACCTATAGAAGATCCTCCGAATCTCTTCAGCACAGCAGAG
AGAGGGCGGGGCAAAGACTCAGTAACTGAACAACGGCTCTCTTGGGTTGC
ACAATAAGCTATAGATCTTTCGTGGGGGTAAAGAGGAAGAGTAATTAAAA
CAGCTAAAAACTATTTTAAAACTTCCCAAAGGAACTTTGTAGCCAGGGTT
TTACCTTCTGGAAAAAAACCCGGGGGAAAAAAAAAAACCCCAAAGGGGGA
ATTTTTTTTGAAAAGGGGAAAAAGGCCGCAAAAAAAAGGGGGGGGGAAAA
AAAAAAAAAAGGGGGTGTTATAAGGGGGAAAAAGAAAATTTTTTCCCAAA
AAAATGGGGGGTTTTTTTAAAAAAAAATTTTTTTTTTGGGGGGGGGAAAA
AAAAACCCCCCCCCCAAAGGGGTGTGGGCCCCCCCCCTTTTTTTTTTTTG
GAGAAACACAAGGGGTTTTCCCCCCCCCCCTCCCCCCAAAAATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no501_a07.b1 MSMg01no501_a07.b1 CHROMAT_FILE:
MSMg01no501_a07.b1 PHD_FILE: MSMg01no501_a07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:46 2005
         (642 letters)



>mm_chr3_154443832_154444872
          Length = 1041

 Score =  874 bits (452), Expect = 0.0
 Identities = 476/484 (98%), Gaps = 1/484 (0%)
 Strand = Plus / Minus

                                                                        
Query: 159  gacaagggctccttgctgctcgccactgcatgtaccaaatgagacagccagcttgtgtct 218
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1041 gacaagggctccttgctgctcgccactgcatgtaccaaatgagacagccagcttgtgtct 982

                                                                        
Query: 219  ggatagtctcctgtcccagacttctgtcttaacagatgctcactggaatcaatgatatgt 278
            ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 981  ggatagtctcctgtcccagacttctgtcttaacggatgcacactggaatcaatgatatgt 922

                                                                        
Query: 279  ggatatgtggattctagggattggattcgggtcttcatacttggcaaatgctttatgcat 338
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 921  ggatatgtggattctagggattggattcgggtcttcatacttggcaaatgctttatgcat 862

                                                                        
Query: 339  taagccatctctcctgtccctgttccactgcgatgtcgtggacggcagagctagctcctg 398
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 861  taagccatctctcctgtccctgttccactgcgatgtcatggacggcagagctagctcctg 802

                                                                        
Query: 399  ctcacagagctggctcctgctcacagcccagagctgtggcaagagtaggcattgttgcct 458
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801  ctcacagagctggctcctgctcacagcccagagctgtggcaagagtaggcattgttgcct 742

                                                                        
Query: 459  ctttaaagcccaaggaaaaatgggagtgaacacagaagtttcagagaccaaaaaaaaaaa 518
            || || ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 741  ctctagagcccaaggaaaaatgggagtgaacacagaagtttcagagacc-aaaaaaaaaa 683

                                                                        
Query: 519  tacatctttcctaattgctgtggcttatccttataaagtaaaacaaataagaagtttgct 578
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 682  tacatctttcctaattgctgtggcttatccttataaagtaaaacaaataagaaatttgct 623

                                                                        
Query: 579  ttctctgttacagttgcaaaagaacatggtctggcataacaagccatgttattttctagg 638
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 622  ttctctgttacagttgcaaaagaacatggtctggcataacaagccatgttatttgctagg 563

                
Query: 639  caga 642
            ||||
Sbjct: 562  caga 559


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1041
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1031
Effective search space:   651592
Effective search space used:   651592
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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