BAC Information

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BAC

Clone NameMSMg01-501C05
Chromosome3 (Build37)
Map Location 114,824,425 - 114,824,673
singlet/doubletsinglet
Overlap geneOlfm3
Upstream geneCol11a1, LOC100043220
Downstream geneEG546808, Edg1, Dph5, LOC626061, Slc30a7, Extl2, Vcam1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-501C05.T7 (MSMg01no501_c05.b1)MSMg01-501C05.TJ (MSMg01no501_c05.g1)
ACCAG576809AG576810
length656635
length of high quality
(start - end)
249 (53 - 301)161 (58 - 218)
definitionCHROMAT_FILE: MSMg01no501_c05.b1 PHD_FILE: MSMg01no501_c05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:27:55 2005CHROMAT_FILE: MSMg01no501_c05.g1 PHD_FILE: MSMg01no501_c05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:27:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AACACTATAGTTCGTAAATCCGCGGAATTCATTATGAAATTACTTAAAAT
ATAGTCCTATTAAGATTTGCTATTAAATTAATACATTGGTTTTACTAAAG
CCTACAACATAATTAAGTGAGTAACTGTTAGTTGAAGGTTGTGGCAACTA
GAACGTAAACATAAGTTGGGCATGTAAAATAAAATAGACATTTTTGTAAG
GCAAGGTTCAGGACAAAGATAATACTTTAGAGTTATTATTGATCATATGG
CTACATCAGAAGATGTTCTTTAAAATATGTGCTGGGTATACTCAGCAATA
TTTTTGTTCTAGACAGAAAATAAAGCAAAACAAATTAATTTGAAGGTAGT
AAATTCAGTGATTTCTTTTTCCAACAAATGGCATTTTCTAAGAGATATAT
TTTGTGCATGTTTGTATGGTCACAAACAGATGGGAGGTCAGAGGATTCCG
GGGATTCTTGAATTCAACCTTTCCGTTTCCAAAAAAGGCAACTCCCCCTT
GGCCTTCCTGGGCAAAAACAATCCCTTACATTTTTGGGGCCATTTTCCCC
CCCTTTAAAAAAACCCTTTAAAAAAGGCCCCTAAGGCCTTAGAAAATTTT
CTCAGGGGGGTACCCCCTGAAAAAAAAATTTTTGACATCTCCCATACTCT
TTAAAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCTGATCTTTCCAAGACTTTTATCATGAATGGGTGTTGGATCTT
GTCAAATGCTTTTCTGCATCTAACAAGATGATCATGTGGTTTTTGTCTTT
GAGTTTGTTTATATAATAGATTAGATTGGTGGATTTTCATATATTAAACC
ATCCCTGCATCCCTGGAAATAAACCCACTTTGGTCAGGAAGGAAAGAATT
GCCTTTAAAGGGGGGTTCCTGGGGAAATCCCCGGTTTGGGGGGGAAATTT
TTTTTGGGGGAATTTTTGGCCCACATTTTTTTTTATAAAANGGGGGGGGG
GGGAAGAAAAAACCCCCCCCCCCCCTTTTTGGGGGGGGGATCCCCTCCTC
CCGGGCGGGGGGTTTGTCCCCCCACAAAAAAAAAAAAGGGGGGCCCCTCC
CTAAAAGATATTGTTTTTATAAAAAACCCCCCCTCCCCTCTTTTTTTTTT
TGAAAAAAAAAAAATGGGGGGCCCCCCCCAACAAAAAAAATTTCCTCTTT
TTCTTTTTTTTGGTGGGGAGAATAAAAAAATATATTATCACATATAATCC
CCCCCCTGGGGGGGGGGTGGTTTTTTTTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no501_c05.b1 MSMg01no501_c05.b1 CHROMAT_FILE:
MSMg01no501_c05.b1 PHD_FILE: MSMg01no501_c05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:55 2005
         (249 letters)



>mm_chr3_114824225_114824874
          Length = 650

 Score =  443 bits (229), Expect = e-129
 Identities = 244/249 (97%), Gaps = 1/249 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtcctattaagatttgctattaaattaatacattggtttt-actaaagcctacaacata 59
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 201 agtcctattaagatttgctattaaattaatacattggtttttactaaagcctacaacata 260

                                                                       
Query: 60  attaagtgagtaactgttagttgaaggttgtggcaactagaacgtaaacataagttgggc 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attaagtgagtaactgttagttgaaggttgtggcaactagaacgtaaacataagttgggc 320

                                                                       
Query: 120 atgtaaaataaaatagacatttttgtaaggcaaggttcaggacaaagataatactttaga 179
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct: 321 atgtaaaataaaatagacatttttgtaaggcaaggttcaggacaaagataataccttaca 380

                                                                       
Query: 180 gttattattgatcatatggctacatcagaagatgttctttaaaatatgtgctgggtatac 239
           |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct: 381 gttattattgatcatatggctacatcagaagatgttctttgaaatatatgctgggtatac 440

                    
Query: 240 tcagcaata 248
           |||||||||
Sbjct: 441 tcagcaata 449


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 650
Length adjustment: 9
Effective length of query: 240
Effective length of database: 641
Effective search space:   153840
Effective search space used:   153840
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)