XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTG
TTTATCTCTGTACCCCATTTTTAATAGGGGTATTTGATTTTCTGGAGTCC
ATCTTCTTGGGTTCTTCATATATATTGGATATAAGTCCCCTATCTGATTT
AGGATTGGTAAAGATCCTCTCCCATTTTGTGACCTTTTTGTCTTATTGAC
AGTTTCTTTTGCCTTACAGAACCTTTGAAATTTTATGAGGTTTCATTTGT
TAATTCTTGATCTTACAGCACAATCCATTGGTGTTCTGTTCAGGAATTTC
CCCCTGTGCCCTTATAAGAGGCTCTTCCCCATTTTCTCCTCTATAAGTTC
CCGTGTATCTGGTTTTATGTGGAAGTCCTTGATCCTCTTAGACTTGATCT
TAGTACAAGGAGATAATTATGGATCAATTTGCATTCTTCTGCATGATAAC
CACCAGCTGTGCCAGCACTATTTGTTGAAAATGCTGATTTTATCCCCCCC
CCCCCCCCCACTGAATGGTTTTAGTTCCCTCGTCAAAGATCAAGTGACCA
TAGGTGTGTGGGTTCATATCTGGGTCTTGAATTCTATTCCATTGATCTAC
CTGACTGTTGCTGTACCAGAATCATGCAGTTTTTATCACAATTGCTCCAT
AGCACAGATTTAGGTCAGGCATGTTGATTCTACCAGAGGTTCTTTTATCA
TTG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXAGGAACATATACAAATACAAAGCAAGTACCAAAGATCCTAAGT
CAACGAAACAAAGGACCATTTTGGAAAGCATATAGAAGTTTCAAAAAATT
AAGTGCAGGGCATCAATATTTGTGGAAAAAGTAAGATAATTCTGAGAGGG
GGATTATATAATAATGAATGTATTAGAAGAAAAGCCCAAATCTGGAAAAA
CAGCACCAAAATCAACCCAAATCAATAATCTGAAAGATATTGCAGAGAAG
AGAACATATTTGTTTAAGTGAATAACCTAGCTTCAGTAGAGAAAATCTCA
AAATAAACAGCCTTTTTTGTGTTATTAACAAAATTGTTGAAGACCTATTA
ATATGAGTGAAGAAAATAAAAGTGTTAGGCAAAGGTAACAAAACTCAGTA
ATAGATTTTATTTCTGGCTTGCAAACATGTAAAGGAAAGGATGGAAACTG
TGCAAATATATTTATATATCATGCAGACATGTGCACATGTGTGTATGTGT
GTATTTGAAATCTTGAAATAAATGGGACACACACTTTAAATCATCAAAAC
TGTATACAACAAGATTCAAAAATTCAATAGGTGTTTAACCATTAATAAAA
GTGAAGATCTATTAAAAAAAAATCCCTAGTTCTAAATAGGCTAATC

Query= MSMg01no501_g14.g1 MSMg01no501_g14.g1 CHROMAT_FILE:
MSMg01no501_g14.g1 PHD_FILE: MSMg01no501_g14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:14 2005
         (609 letters)



>mm_chr3_4521313_4522321
          Length = 1009

 Score = 1129 bits (584), Expect = 0.0
 Identities = 599/604 (99%), Gaps = 2/604 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   aacatatacaaatacaaagcaagtaccaaagatcctaagtcaacgaaacaaaggaccatt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 aacatatacaaatacaaagcaagtaccaaagatcctaagtcaacgaaacaaaggaccatt 263

                                                                       
Query: 64  ttggaaagcatatagaagtttcaaaaaattaagtgcagggcatcaatatttgtggaaaaa 123
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 264 ttggaaagcatatagaagtttcaaaaagttaagtgcagggcatcaatatttgtggaaaaa 323

                                                                       
Query: 124 gtaagataattctgagagggggattatataataatgaatgtattagaagaaaagcccaaa 183
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gtaagataattctgagagggg-attatataataatgaatgtattagaagaaaagcccaaa 382

                                                                       
Query: 184 tctggaaaaacagcaccaaaatcaacccaaatcaataatctgaaagatattgcagagaag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tctggaaaaacagcaccaaaatcaacccaaatcaataatctgaaagatattgcagagaag 442

                                                                       
Query: 244 agaacatatttgtttaagtgaataacctagcttcagtagagaaaatctcaaaataaacag 303
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 443 agaacaaatttgtttaagtgaataacctagcttcagtagagaaaatctcaaaataaatag 502

                                                                       
Query: 304 ccttttttgtgttattaacaaaattgttgaagacctattaatatgagtgaagaaaataaa 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ccttttttgtgttattaacaaaattgttgaagacctattaatatgagtgaagaaaataaa 562

                                                                       
Query: 364 agtgttaggcaaaggtaacaaaactcagtaatagattttatttctggcttgcaaacatgt 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 agtgttaggcaaaggtaacaaaactcagtaatagattttatttctggcttgcaaacatgt 622

                                                                       
Query: 424 aaaggaaaggatggaaactgtgcaaatatatttatatatcatgcagacatgtgcacatgt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 aaaggaaaggatggaaactgtgcaaatatatttatatatcatgcagacatgtgcacatgt 682

                                                                       
Query: 484 gtgtatgtgtgtatttgaaatcttgaaataaatgggacacacactttaaatcatcaaaac 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 gtgtatgtgtgtatttgaaatcttgaaataaatgggacacacactttaaatcatcaaaac 742

                                                                       
Query: 544 tgtatacaacaagattcaaaaa-ttcaataggtgtttaaccattaataaaagtgaagatc 602
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 743 tgtatacaacaagattcaaaaaattcaataggtgtttaaccattaataaaagtgaagatc 802

               
Query: 603 tatt 606
           ||||
Sbjct: 803 tatt 806


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1009
Length adjustment: 10
Effective length of query: 599
Effective length of database: 999
Effective search space:   598401
Effective search space used:   598401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)