XXXXXXXXXXXXXXXXXXXXXXTATTCGAGAAGATCCGCGGAATTCTTTG
TNCTGCCATGAACCCCATTTTTTAATGGGGTTATTTGATTTTCTGAAGTC
CACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCTGATT
TAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGTCCTA
TTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGGTCCCA
TTTGTCAATTCTCGATCTTACAGAGCAAGCCATTGCTGTTCTGTTCAGGA
ATCTTTCCCCTGGATCCATATCTTCAAGGCTTTTCCCCACTTTCTCCTCT
ATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCCACTTAGA
TTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCGCATTCTTCTAC
ATGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCTGTCTTTC
TTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGACCATAGGT
GTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCTACTTGTC
TGTCTCTATACCAGTACCATGCAGTTTTTATCACAATTGCCCTGTAAGAA
AGCTTTTTGTCATGCATGGGGATTCCACCAGATGTTCTTTTATCCTTGAG
AAGAGTTTTTGCTATCCTAGGTTCTTT

CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATTAGGATCTTCCTTGCCCATCAAAGAG
GGAACTTGATGCCTAAGGAGGTCAGGCAAACTCTAGACTTTGGGGTCCTC
TGACATGGGTTGCTCTCCATTCCTAAATGAAAAAAAAAATTCACTATTTC
CACACTCAAAGGCAAGACGCCAGAGAAAGAGCTCCTTCTGATGGCCCCAC
AATCCTATGTGCACCTCCCTGCCTCTCATGGGGACTTCCCAGACTGAGAT
GCACCAAGAATCTCAGACTCCTTTTCAGAGGAAACTCTCTGGGAGCCAAT
AAACCACAACCTTTTCTAGCCCAATAAACCCAGCTTTTCCTGCCTACACT
GCTGGTTTGCTCTACTGGGCTCCAATGGCATGGGCTCAGGTGTCCTGGCC
AATGGAGGGTGGACATTCAGCCTAGAAACAGAGGTCGATGGGGGTGAGGT
GTGGAGTGAGGGACCTGGTCTCTGGAAAGGGGTGACTAGACAGACGTCTC
CAAAGGTAATGGTATCAAATGCCAGGCAGGAGGAAGCCCTTAGTGGGGAA
GGAGTTCAGGCAGACTCCTAAACCAAAAGAAGCCAGATACCCAAACCCAA
GTCATTAATGATGTACAGGAGGGCTGAGTGAGAAAGAATCTTGGAGGTGT
CCAAGGCTTCTGGGAATGGACTGCTGTATAAAAACTTCAGAAATAGGCAT

Query= MSMg01no501_h07.g1 MSMg01no501_h07.g1 CHROMAT_FILE:
MSMg01no501_h07.g1 PHD_FILE: MSMg01no501_h07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:18 2005
         (582 letters)



>mm_chr3_14383002_14383984
          Length = 983

 Score = 1027 bits (531), Expect = 0.0
 Identities = 570/583 (97%), Gaps = 1/583 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   attaggatcttccttgcccatcaaagagggaacttgatgcctaaggaggtcaggcaaact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attaggatcttccttgcccatcaaagagggaacttgatgcctaaggaggtcaggcaaact 260

                                                                       
Query: 61  ctagactttggggtcctctgacatgggttgctctccattcctaaatgaaaaaaaaaattc 120
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctagactttggggtactctgacatgggttgctctccattcctaaatgaaaaaaaaaattc 320

                                                                       
Query: 121 actatttccacactcaaaggcaagacgccagagaaagagctccttctgatggccccacaa 180
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 321 actatttccacactcaaaggcaagacgccagagaaagagctctttctgatggccccacaa 380

                                                                       
Query: 181 tcctatgtgcacctccctgcctctcatggggacttcccagactgagatgcaccaagaatc 240
           | |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 381 ttctatctgcacctccctgcctctcatggggacttctcagactgagatgcaccaagaatc 440

                                                                       
Query: 241 tcagactccttttcagaggaaactctctgggagccaataaaccacaaccttttctagccc 300
           ||||||||||   ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 441 tcagactcctacccagaggaaactctctggaagccaataaaccacaaccttttctagccc 500

                                                                       
Query: 301 aataaacccagcttttcctgcctacactgctggtttgctctactgggctccaatggcatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aataaacccagcttttcctgcctacactgctggtttgctctactgggctccaatggcatg 560

                                                                       
Query: 361 ggctcaggtgtcctggccaatggagggtggacattcagcctagaaacagaggtcgatggg 420
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggctcaggtgtcctggccaatagagggtggacattcagcctagaaacagaggtcgatggg 620

                                                                       
Query: 421 ggtgaggtgtggagtgagggacctggtctctggaaaggggtgactagacagacgtctcc- 479
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| 
Sbjct: 621 ggtgaggtgtggagtgagggacctggtctctggaaaggggtgactagacagatgtctcct 680

                                                                       
Query: 480 aaaggtaatggtatcaaatgccaggcaggaggaagcccttagtggggaaggagttcaggc 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaaggtaatggtatcaaatgccaggcaggaggaagcccttagtggggaaggagttcaggc 740

                                                      
Query: 540 agactcctaaaccaaaagaagccagatacccaaacccaagtca 582
           |||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agacccctaaaccaaaagaagccagatacccaaacccaagtca 783


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 983
Length adjustment: 10
Effective length of query: 572
Effective length of database: 973
Effective search space:   556556
Effective search space used:   556556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)