XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTATCT
TTCTCTGATCCCCATCCTTTTGAGGTGTATACTTTGGCACTTCTTTGAAC
ATTTGTCTCTTAATGTTGTTAAAGTAAAAATCAGAACATTCAGATATACA
ATGTGCAGAGACAGTCAAGGAGCTATTTAGGTGCTCAAAATAGGCTGTCT
TCAATTTCACCTACTAGACTGTTTTTGTTATTGTTGTTTTTATTTATTTT
GCTGTTATTCTCTGCCAGCACCAATCATACCCACTAAGAGCTTAATAAAT
ATTTTCTTCTCTCTGAGTATATGTGTTTATGTGTATATACATATTCATGA
AGTCAGACTTTGAGTATTATACCTCAGGAACTGCCCTTCTTAATTTTTAG
ATGTAGTTTCTCATTGGACTGTAACTCATGGCTGACCAAATAAACTTGAG
GACAACTAATCTTTCTTTACCAGAACCAGGATTTCAGATGTGTAGGCATT
TCATGTAGGTTTGGGGATCAGATACAAAATGATATATGTGGCTGACAATT
TCTGTACCAACTGAATTATCTTTTCAGCCTCATTTTAACTAATATTTAAC
AATGAGTATTCAACTACAGCAAAGTTAGCTTCACATATTTTTAAGTGGCA
AAGGTTTCCCAAGGATGAAAAACCATTATGATATTTTGACACTATACAGA
ATCTTTGGTATCTCAG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCCC
AAAATTCCCCTATACTTGTTCCCTTCACAGGACCAAGGGCCTCTCCTCTC
ATTGATGACTGACTAGTCCATCCTCTGCTACATATGCAGCTAGAGCCCTG
AGTCCCAAACCATGTCTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGT
TGTTTCCCATGGTTTAGTCCCAGAGAGCTCTGAGGGTACTGGTTCATTCA
TATTGTTCCTCCTGTGGTGCTACAAACTCCTTCAGCTCCATTGGTATTTT
CTCTATTTCCTTCATTGGGGACCTTGTGCTCCAGCCAATGGATGGCTGAG
AGCATTCACTTCGGTATTTGTCAGGCATTGGCAGAGCCTCTCAGGAGACA
GTTATATCAGTCCCCTGTCAGCAAACTCTTGTTGGCATCCACAATAGCAT
CTTGTTTTGGTGGTTGTTTATGTGATGGATCCCCAGGTGGGGAAGTCTCT
GGATGGTCAGAACCTCTGGTGGAATCACAAACCCTGACCTCAAAGTTTAC
TAGAGAGCAACTGTGATAAAACAAACAAACAAACAAAAACAAAAAAACAA
AAAAAACTAAAACTACAACCACCAAAAACTCATGGTACCAGTACTGTATC
AGACAGTTAGATCAATGGAATAGAATTGAAGAAACCAAAATCAACTCACA
CACCCAT

Query= MSMg01no501_l10.b1 MSMg01no501_l10.b1 CHROMAT_FILE:
MSMg01no501_l10.b1 PHD_FILE: MSMg01no501_l10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:35 2005
         (617 letters)



>mm_chr3_4316754_4317770
          Length = 1017

 Score = 1133 bits (586), Expect = 0.0
 Identities = 607/614 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctatctttctctgatccccatccttttgaggtgtatactttggcacttctttga 63
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 817 ggaattctatctttctctgatccccatccttttgagatgtatactttggcacttctttga 758

                                                                       
Query: 64  acatttgtctcttaatgttgttaaagtaaaaatcagaacattcagatatacaatgtgcag 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 acatttgtctcttaatgttgttaaagtaaaaatcagaacattcagatatacaatgtgcag 698

                                                                       
Query: 124 agacagtcaaggagctatttaggtgctcaaaataggctgtcttcaatttcacctactaga 183
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 agacagtcaaggagctctttaggtgctcaaaataggctgtcttcaatttcacctactaga 638

                                                                       
Query: 184 ctgtttttgttattgttgtttttatttattttgctgttattctctgccagcaccaatcat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 ctgtttttgttattgttgtttttatttattttgctgttattctctgccagcaccaatcat 578

                                                                       
Query: 244 acccactaagagcttaataaatattttcttctctctgagtatatgtgtttatgtgtatat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 acccactaagagcttaataaatattttcttctctctgagtatatgtgtttatgtgtatat 518

                                                                       
Query: 304 acatattcatgaagtcagactttgagtattatacctcaggaactgcccttcttaattttt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 517 acatattcatgaagtcagactttgagtattatacctcaggaactgcccttcttaattttg 458

                                                                       
Query: 364 agatgtagtttctcattggactgtaactcatggctgaccaaataaacttgaggacaacta 423
           ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct: 457 agatgtagtttctcatttgactgtaactcatggctgaccaaataaacttgagaacaacta 398

                                                                       
Query: 424 atctttctttaccagaaccaggatttcagatgtgtaggcatttcatgtaggtttggggat 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 atctttctttaccagaaccaggatttcagatgtgtaggcatttcatgtaggtttggggat 338

                                                                       
Query: 484 cagatacaaaatgatatatgtggctgacaatttctgtaccaactgaattatcttttcagc 543
           || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 337 caaatacaaaatgatatatgtggctgacaatttctgtaccaactgaattatcttctcagc 278

                                                                       
Query: 544 ctcattttaactaatatttaacaatgagtattcaactacagcaaagttagcttcacatat 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 ctcattttaactaatatttaacaatgagtattcaactacagcaaagttagcttcacatat 218

                         
Query: 604 ttttaagtggcaaa 617
           ||||||||||||||
Sbjct: 217 ttttaagtggcaaa 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1017
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1007
Effective search space:   611249
Effective search space used:   611249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)