Query= MSMg01no501_l14.b1 MSMg01no501_l14.b1 CHROMAT_FILE:
MSMg01no501_l14.b1 PHD_FILE: MSMg01no501_l14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:36 2005
(637 letters)
>mm_chr3_112024460_112025496
Length = 1037
Score = 1096 bits (567), Expect = 0.0
Identities = 618/635 (97%), Gaps = 2/635 (0%)
Strand = Plus / Plus
Query: 4 gaattctccgtatataccgagccaaggggataatacatacaaataatctctatggtagca 63
||||||||| || | || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattctccatagagacagagccaaggggataatacatacaaataatctctatggtagca 263
Query: 64 ttctacagtcacccttaaggacagaaaaatagggagacttaggaccattcataaaagagt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttctacagtcacccttaaggacagaaaaatagggagacttaggaccattcataaaagagt 323
Query: 124 ttactacatattagaacttatgcatatcacttgtagagtgcaaaatatactgtattatta 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttactacatattagaacttatgcatatcacttgtagagtgcaaaatatactgtattatta 383
Query: 184 tacctcatacaacatgaatgctgtataaataattgttgtatacaatgtttaggaaacatt 243
|||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tacctcatccaatgtgaatgctgtataaataattgttgtatacaatgtttaggaaacatt 443
Query: 244 gatgaaagtaattctgtttatgtccagtaaagaatatttctttcataataactacctggc 303
|||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |
Sbjct: 444 gatgaaagtaattctgtttatgtccagtaaaggataattctttcataataactacctg-c 502
Query: 304 -cttggttgtggttcagaatttgttaaagcagattagttgctttatgtatgtgtggaatg 362
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct: 503 acttggttgtggttcagaatttgttaaagcagattagttgctttatgtatgtgcggagtg 562
Query: 363 aaggatgggaggatggagagagacttaagtcaactcatatccacctattgattggctcat 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 aaggatgggaggatggagagagacttaagtcaactcatatccacctattgattggctcat 622
Query: 423 gggtttatgtaaattagcaagtcatcaatctacaagacactctgtcagagcagagacatc 482
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gggtttatgtaaattagtaagtcatcaatctacaagacactctgtcagagcagagacatc 682
Query: 483 tggccagaaagtgatattatcatgttgaggcataattccccagggaaattcagctttata 542
||||||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct: 683 tggccagaaagtgttattatcatgttgaggcataattcctcaggaaaattcagctttata 742
Query: 543 attactaactttcaactgattggatgaagccaggattgtagaaagtaatctacttaaagt 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 attactaactttcaactgattggatgaagccaggattgtagaaagtaatctacttaaagt 802
Query: 603 caattgattataggtgttatccacatctagaaaat 637
|||||||||||||||||||||||||||||||||||
Sbjct: 803 caattgattataggtgttatccacatctagaaaat 837
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1037
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1027
Effective search space: 643929
Effective search space used: 643929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no501_l14.g1 MSMg01no501_l14.g1 CHROMAT_FILE:
MSMg01no501_l14.g1 PHD_FILE: MSMg01no501_l14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:36 2005
(605 letters)
>mm_chr3_112184375_112185379
Length = 1005
Score = 1123 bits (581), Expect = 0.0
Identities = 599/605 (99%)
Strand = Plus / Minus
Query: 1 agaagagatataacatatagtatagctgtgaaaaaacagatatataaaatagaaacacag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 agaagagatataacatatagtatagctgtgaaaaaacagatatataaaatagaaacacag 624
Query: 61 actaaattatatgaacaattaatttaacctaagattaaaaatatgtataactctttacaa 120
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 actgaattatatgaacaattaatttaacctaagattaaaaatatgtataactctttacaa 564
Query: 121 gtaaccggggtgagatgtggttacagaggcagagcaaggctcattcagtgttggctttga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gtaaccggggtgagatgtggttacagaggcagagcaaggctcattcagtgttggctttga 504
Query: 181 gttctccttaccgccctcattattatttaaacaatgtagctggaatttgaacaccctatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gttctccttaccgccctcattattatttaaacaatgtagctggaatttgaacaccctatg 444
Query: 241 tgttgaagctcttaaagaaacagatttctaagaattcctcaaattatatatcatctctgt 300
||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 443 tgttgaagctcaaaaagacacagatttctaagaattcctcaagttatatatcatctctgt 384
Query: 301 attacagacaccagaaaccatcccaaaaatcatacacacaacaaacaaaccaaacaaaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 attacagacaccagaaaccatcccaaaaatcatacacacaacaaacaaaccaaacaaaaa 324
Query: 361 taccagaagtacatgatcttgccattcgataggctaaattttaaagactgttactgatct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 taccagaagtacatgatcttgccattcgataggctaaattttaaagactgttactgatct 264
Query: 421 aaaatatgagtgttggcaagactgtttctttttttttttattagatattttcttcattta 480
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 263 aaaatatgagtgttggcaagactgtttctttctttttttattagatattttcttcattta 204
Query: 481 catttcttttttaaatacatttttttagatattttcttcatttacatttcaaatgttatc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 catttcttttttaaatacatttttttagatattttcttcatttacatttcaaatgttatc 144
Query: 541 cccatagtcccctatacccttcctctgccctgctccccaacccacacactcctgattcct 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143 cccatagtcccctatacccttcctctgccctgctccccaacccacacactcctgattcct 84
Query: 601 ggccc 605
|||||
Sbjct: 83 ggccc 79
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1005
Length adjustment: 10
Effective length of query: 595
Effective length of database: 995
Effective search space: 592025
Effective search space used: 592025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
