Query= MSMg01no501_m03.b1 MSMg01no501_m03.b1 CHROMAT_FILE:
MSMg01no501_m03.b1 PHD_FILE: MSMg01no501_m03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:38 2005
(305 letters)
>mm_chr3_119065426_119066130
Length = 705
Score = 567 bits (293), Expect = e-166
Identities = 302/305 (99%)
Strand = Plus / Minus
Query: 1 aaaagtccaccaaggtagcaagtattttggagtttttcttggtatattttaggctgtgtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aaaagtccaccaaggtagcaagtattttggagtttttcttggtatattttaggctgtgtc 446
Query: 61 cttatacataggagtcacagtgaagcatcaactttctggtctcatgctgtcctgggcctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cttatacataggagtcacagtgaagcatcaactttctggtctcatgctgtcctgggcctt 386
Query: 121 ggtacatcagaaagaccaactacctctgtctatcgttacaaatgcatgcagcttggtggt 180
|||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct: 385 ggtacatcagaaagaccaactacctctgtccatcattacaaatgcatgcagcttggtggt 326
Query: 181 atgacaagtgaatcacccttagactggtcttacaaaccatctttcttacaaaccacattt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atgacaagtgaatcacccttagactggtcttacaaaccatctttcttacaaaccacattt 266
Query: 241 tattcactccacatagctgtcagaagagcaccagtcctctcactgaatttaacaaaatat 300
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tattcactccacacagctgtcagaagagcaccagtcctctcactgaatttaacaaaatat 206
Query: 301 tagac 305
|||||
Sbjct: 205 tagac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 705
Length adjustment: 9
Effective length of query: 296
Effective length of database: 696
Effective search space: 206016
Effective search space used: 206016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no501_m03.g1 MSMg01no501_m03.g1 CHROMAT_FILE:
MSMg01no501_m03.g1 PHD_FILE: MSMg01no501_m03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:38 2005
(672 letters)
>mm_chr3_118894529_118895599
Length = 1071
Score = 973 bits (503), Expect = 0.0
Identities = 527/535 (98%), Gaps = 1/535 (0%)
Strand = Plus / Plus
Query: 1 tctctaacataaaataataactattcctattttggtagtgtgggagaaattattagaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 tctctaacataaaataataactattcctattttggtagtgtgggagaaattattagaaaa 69
Query: 61 tatgtaaataagaccggaaaacctggatcattaggaaagtcaaagctattaaaaagctat 120
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 tatgtaaataagaccagaaaacctggatcattaggaaagtcaaagctattaaaaagctat 129
Query: 121 cagaaaaacgagaacattaaggcacagacaaagatatagtattttatttaaagccaaatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 cagaaaaacgagaacattaaggcacagacaaagatatagtattttatttaaagccaaatt 189
Query: 181 ttatatcaaacatgtgaggaaatgaggaaagtatgaagttacttaagtgcacaaaataga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 ttatatcaaacatgtgaggaaatgaggaaagtatgaagttacttaagtgcacaaaataga 249
Query: 241 taacattatttgatgatgttatcaatctcagaatttttgttgtcttgtattagaatattt 300
||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 250 taacattatttgatgatgttatcaatcgcggaatttttgttgtcttgtattagaatattt 309
Query: 301 acataataatgttggccagaaaatgtcttaaaatttctcaagaatttatttcagatttta 360
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 310 acataataatgttggccagaaaatgtcttaaaatttctcaagaatttaattcagatttta 369
Query: 361 gctagctatgctgattattactagttgacttaggttatgttgaagattaagagacaaatg 420
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 370 gctagctatgctgattattactagttgacttaggttatgttgaagattaaaagacaaatg 429
Query: 421 tatataagtacatacatcaatgccacagaactttaagaaggtcaaattatgcaatctcaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 tatataagtacatacatcaatgccacagaactttaagaaggtcaaattatgcaatctcaa 489
Query: 481 aatacagaaagatgatttgatgcaatcacacctataagagaactgcatg-ttttt 534
||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||
Sbjct: 490 aatacagaaagataatttgatgcaatcacacctataagagaactgtatggttttt 544
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1071
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1061
Effective search space: 702382
Effective search space used: 702382
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
