BAC Information

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BAC

Clone NameMSMg01-502D10
Chromosome3 (Build37)
Map Location 138,476,948 - 138,477,438
singlet/doubletsinglet
Overlap geneTspan5
Upstream geneH2afz, Dnajb14, Map2k1ip1, Dapp1, EG329763, LOC100039528, Mttp, Rg9mtd2, 4930579F01Rik, Adh7, Adh1, Adh6a, LOC639769, Adh4, Adh5, Metap1, EG383925, EG668879, Eif4e, EG545570, LOC668881, LOC668882, Ppia-ps3_1437.1
Downstream geneLOC620771, Rap1gds1, EG229879, B930007M17Rik, LOC100039840
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-502D10.T7 (MSMg01no502_d10.b1)MSMg01-502D10.TJ (MSMg01no502_d10.g1)
ACCAG577622AG577623
length725705
length of high quality
(start - end)
491 (45 - 535)648 (58 - 705)
definitionCHROMAT_FILE: MSMg01no502_d10.b1 PHD_FILE: MSMg01no502_d10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:11 2005CHROMAT_FILE: MSMg01no502_d10.g1 PHD_FILE: MSMg01no502_d10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCACTTTCGAGAGAGGATNCGCGGAATTCTCAGTTTTCTCAATCAAAGC
ATATTACATGGGTGTTTCCACACCATTTGAAGTGATGATTTAAATTCATT
TCTAGTTGTGAGCTGTGCGAGAGTGGACGCCCTGGGCTTTGGAAGCTGCT
CTTTCTCCATGTGGCCTTTTAAGCTGCGGTAGATGTTGGTGAGGAAAGGC
GTTCTTGTGATGTCTTGTCTTTTCTTTTTTTCAACAAGTGGTTCCCCCCA
CCCCTGCTCCCACGAGAGGCAGGGTTTCTCTGTGTAGCCCTGTCTGTCCT
GGAACTCCCTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGC
CTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCGCCACCGCTGCCTTGC
GAGATGTATTTTCTTAAGGGTGTTTTTCCTTGTACTTCCAGGTCAGACCT
TACGAGGACAAACTCAATTGTGGATTTAACGTCTGTGTACTCCTCAGCGT
CTCCAGATCCCCTTCAGAACTTTGTAGAAATTGTTAGTGTTGTTTGGGTT
GATAGCCATGGCCAACCCAGGGACAGAACAAAGGAGACATCTCTAATCTG
AAAGGAAAGAGGGTAGAGGCGCATTGGTGTGTATCCTCCGAGACTCCTTC
CCTCACAGGAAAGAATGTGTATCCTTTCCTCTGGNGGAAGGGTGGGTGAC
TGGATCAGCCCAGACAAAAACACAT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXAGAGTTTATCTTGTGTTGACCAACTACTCCTGGGCATGGGACC
TATGCTAGGGTGTGGTTGATACTCCCAATGACACTCCATTAGACCAAACT
GATTTTTCATTTGCTGGCGGTTATCAGTTGCAAATTCTTCTTGGTTCAGT
ATGGGGCTTCCTCTAACTTGAATCTTCATAGGTCCCGTGCCTGCTGCCAC
AGTCTCTGTGTTCCATCTGTGCACCGGTCCTGTTATGTCCGTGGAGTTAT
ACTCTTCTGACTCTTACAATCTTTCTACCTCCTCTTCTGCATAGATCTTT
GAGACTGGAGGGGAAGATAAAGACGTCCCATGTAGGACTGAGTGCTTCAG
AGTCTCTCACTCGGCATGTTATCTAGCTGTAGGTGTCTGTCAGTTAATTC
TTGCCAGCTTCACGAAGCTTCTCTGGTGAGGGTTGAACAAGGCATGGATG
TGGGTGCAGCATTACGTTATTAGGAGTCATGTTTTTGCTATTCTCCTTAC
CAGAAAAATGGTAGTGGGTTTTCCTGTAGGCATGTGATCTATCTAGTCTA
GGTTCCTGGCCACTCTCCAAGTGTCAGGTGTGGGATCTATTTCATGGAGT
GGGCCTTAAATACTAGACAAAAATATTTGCTCTTGGTGTAACATCTATGC
CACAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no502_d10.b1 MSMg01no502_d10.b1 CHROMAT_FILE:
MSMg01no502_d10.b1 PHD_FILE: MSMg01no502_d10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:11 2005
         (491 letters)



>mm_chr3_138476748_138477638
          Length = 891

 Score =  895 bits (463), Expect = 0.0
 Identities = 484/491 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaagcatattacatgggtgtttccacaccatttgaagtgatgatttaaattcatttcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaagcatattacatgggtgtttccacaccatttgaagtgatgatttaaattcatttcta 260

                                                                       
Query: 61  gttgtgagctgtgcgagagtggacgccctgggctttggaagctgctctttctccatgtgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 gttgtgagctgtgcgagagtggacgccctgggctttggaagctgctctttctccacgtgg 320

                                                                       
Query: 121 ccttttaagctgcggtagatgttggtgaggaaaggcgttcttgtgatgtcttgtcttttc 180
           |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct: 321 ccttttaagctgcggtagatgttggtgaggaaaggcgttcctgtgatgttttgtcttttc 380

                                                                       
Query: 181 tttttttcaacaagtggttccccccacccctgctcccacgagaggcagggtttctctgtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttttttcaacaagtggttccccccacccctgctcccacgagaggcagggtttctctgtg 440

                                                                       
Query: 241 tagccctgtctgtcctggaactccctctgtagaccaggctggcctcgaactcagaaatcc 300
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tagccctggctgtcctggaactccctctgtagaccaggctggcctcgaactcagaaatcc 500

                                                                       
Query: 301 acctgcctctgcctcccaagtgctgggattaaaggcgtgcgccaccgctgccttgcgaga 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 501 acctgcctctgcctcccaagtgctgggattaaaggcgtgcgccaccgctgcctttcgaga 560

                                                                       
Query: 361 tgtattttcttaagggtgtttttccttgtacttccaggtcagaccttacgaggacaaact 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgtattttcttaagggtgtttttccttgtacttccaggtcagaccttacgaggacaaact 620

                                                                       
Query: 421 caattgtggatttaacgtctgtgtactcctcagcgtctccagatccccttcagaactttg 480
           ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 621 caattgtggatttaatgtctgtgtactcctcagcgtctccaggtccccttcagaactttg 680

                      
Query: 481 tagaaattgtt 491
           |||||||||||
Sbjct: 681 tagaaattgtt 691


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 891
Length adjustment: 10
Effective length of query: 481
Effective length of database: 881
Effective search space:   423761
Effective search space used:   423761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)