BAC Information

Click to search

BAC

Clone NameMSMg01-502G13
Chromosome3 (Build37)
Map Location 64,108,748 - 64,109,345
singlet/doubletsinglet
Overlap gene4930518C23Rik
Upstream geneMme, Plch1, LOC100040836, E130311K13Rik, Slc33a1, Gmps, LOC670032, EG56544, LOC380739, EG637004
Downstream geneEG667031, EG637053, LOC672951, EG639869, EG667060, EG667069, LOC100040918, 4933425M15Rik, LOC670110, Kcnab1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-502G13.T7 (MSMg01no502_g13.b1)MSMg01-502G13.TJ (MSMg01no502_g13.g1)
ACCAG577770AG577771
length721759
length of high quality
(start - end)
662 (60 - 721)598 (74 - 671)
definitionCHROMAT_FILE: MSMg01no502_g13.b1 PHD_FILE: MSMg01no502_g13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:26 2005CHROMAT_FILE: MSMg01no502_g13.g1 PHD_FILE: MSMg01no502_g13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTCGC
TTACCAAGAGGCACTGGGGTTCACTCTTGTCATCCTGTCCATCTTTGGGG
CACTTGTGGTCTTGGCAGTCACTGCTGTGTACGTAGTCCACAGACACACT
CCATTGGTGAAAGCCAATGACCGAGAGCTAAGCTTCCTCATTCAGATGTC
TCTGGGAATCACAGTGCTGTCATCCATGCTGTTCATAGGCAAGCCATGCA
ACTGGTCCTGCATGGCCCGCCAGATCACGCTGGCACTGGGCTTTTGCCTT
TGTCTGTTTTTTATTCTTGGAAAAACTATTTCACTCTTTTTTGCCTACAG
AATTTCCATATCCAAAACCCGCCTTATATCTATGCATCCCATTTTTCGAA
AATTAATTGTACTGATCTGTGTTTTAGCGGAGATTTGTGTATGTGCAGTG
TACTTGGTGTTGGAGCCTCCAAAGATGTTCAAGAACATTGAAATTCAAAA
TGTAAAGATCATCTTTGAATGCAGTGAAGGTTCTATAGAGTTTCTGTGCT
CCATATTTGGGTTTGATGTTCTCCTGGCTCTGCTGTGTTTTCTTACAACC
TTTGTGGCTCGCCAGCTGCCAGATAACTATTATGAAGGGAAATGTATCAC
TTTTGGAATTCTGGTTTTTTTCATTGTCTGGATCTCTTTTGTCCCTGCTT
ACTTGAGCACCAAAGGCAAAN
CAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTAAGAAGATCAACATTTTGATGGCAT
ATTTGACATACTTTCTAGGATAATCTGATAACTGGATTCATGTGTGTGTG
CGTGCCTGCTTGTGTTTGTTTTCTGTATAAACTCCTCACTGTGATTTGGT
AGTTTGAACAGCTAAATAATAGAAGCAAGACCAAATTGGATGCATACTGC
ACCTTGAAAAAGATGCTGCAGTTGTATTATCATATCAAATAAGATTTGAT
GATTTACTTACCACTGGTATAAGGATAAGGAAACTCCAGACCTATCAAAT
TCTGCAGTGAATTCTATAAAATTCCTCAGGCAATGTAGACACCAGAAAAT
GGAGAACATTCTTAGATAATATTACAAGATCCTATGACCTTGAGTGTAGA
AAGGACAAGTACAATGTAAGAGGAGGGTAGCTGGCTAGTGTTATATTGGT
GTCAAATTATACTAAAAAAATATGAAAAGTATAATATTTCATGACTGAGT
CCTATTTAATTATAGTCAAGTTGGTTTAACATTTAATATGAGAAAATATC
ATGTTCACAGTTATAGAAAACTTTTTGCTAATGTATACAGGCATACATGC
TAAAAACTGTTATTTTTAAAGAGATTAGATATTTCCTGGTTGTTGATAAT
ATCTCAAAAATCATGAAGTAAATGTCTTTCTATGTGACTTGTGGNAAGAA
TTTCTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no502_g13.g1 MSMg01no502_g13.g1 CHROMAT_FILE:
MSMg01no502_g13.g1 PHD_FILE: MSMg01no502_g13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:26 2005
         (598 letters)



>mm_chr3_64108548_64109545
          Length = 998

 Score = 1141 bits (590), Expect = 0.0
 Identities = 596/598 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttaagaagatcaacattttgatggcatatttgacatactttctaggataatctgataact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttaagaagatcaacattttgatggcatatttgacatactttctaggataatctgataact 260

                                                                       
Query: 61  ggattcatgtgtgtgtgcgtgcctgcttgtgtttgttttctgtataaactcctcactgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggattcatgtgtgtgtgcgtgcctgcttgtgtttgttttctgtataaactcctcactgtg 320

                                                                       
Query: 121 atttggtagtttgaacagctaaataatagaagcaagaccaaattggatgcatactgcacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atttggtagtttgaacagctaaataatagaagcaagaccaaattggatgcatactgcacc 380

                                                                       
Query: 181 ttgaaaaagatgctgcagttgtattatcatatcaaataagatttgatgatttacttacca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgaaaaagatgctgcagttgtattatcatatcaaataagatttgatgatttacttacca 440

                                                                       
Query: 241 ctggtataaggataaggaaactccagacctatcaaattctgcagtgaattctataaaatt 300
           |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgggagaaggataaggaaactccagacctatcaaattctgcagtgaattctataaaatt 500

                                                                       
Query: 301 cctcaggcaatgtagacaccagaaaatggagaacattcttagataatattacaagatcct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cctcaggcaatgtagacaccagaaaatggagaacattcttagataatattacaagatcct 560

                                                                       
Query: 361 atgaccttgagtgtagaaaggacaagtacaatgtaagaggagggtagctggctagtgtta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atgaccttgagtgtagaaaggacaagtacaatgtaagaggagggtagctggctagtgtta 620

                                                                       
Query: 421 tattggtgtcaaattatactaaaaaaatatgaaaagtataatatttcatgactgagtcct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tattggtgtcaaattatactaaaaaaatatgaaaagtataatatttcatgactgagtcct 680

                                                                       
Query: 481 atttaattatagtcaagttggtttaacatttaatatgagaaaatatcatgttcacagtta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atttaattatagtcaagttggtttaacatttaatatgagaaaatatcatgttcacagtta 740

                                                                     
Query: 541 tagaaaactttttgctaatgtatacaggcatacatgctaaaaactgttatttttaaag 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tagaaaactttttgctaatgtatacaggcatacatgctaaaaactgttatttttaaag 798


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 998
Length adjustment: 10
Effective length of query: 588
Effective length of database: 988
Effective search space:   580944
Effective search space used:   580944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)