BAC Information

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BAC

Clone NameMSMg01-502I11
Chromosome3 (Build37)
Map Location 14,125,743 - 14,126,059
singlet/doubletsinglet
Overlap gene0710005M24Rik
Upstream geneLOC100039823, LOC100039861, LOC100041679, LOC100041667, LOC100039882
Downstream geneEG622229, LOC668062, Slc7a12, LOC668068, Lrrcc1, E2f5, 1810022K09Rik, LOC100039929, Car13, EG545507, Car1, LOC100041785, Car3, Car2, EG634323
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-502I11.T7 (MSMg01no502_i11.b1)MSMg01-502I11.TJ (MSMg01no502_i11.g1)
ACCAG577861AG577862
length701711
length of high quality
(start - end)
359 (308 - 666)646 (60 - 705)
definitionCHROMAT_FILE: MSMg01no502_i11.b1 PHD_FILE: MSMg01no502_i11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:35 2005CHROMAT_FILE: MSMg01no502_i11.g1 PHD_FILE: MSMg01no502_i11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCGCTATACGACTCACTTTTCTAAGAGGATCCGCGGAATTCTTTGTTCCC
TTCTGAGTCCAATTTTTTTTTAATGGGGTTATTTGATTTTCTGGAGTCCA
CCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCCCTATCTGATTTA
GGATAGGTAAAGATCCTTTCCCAATATTTTCGTGGACTTTTTGTCTTATT
GACGGTGTCTTTTGCCTTGTAGAAGCTTTGCCATTTCATGAGGTCCCATT
TGTCAATTCTCAATCTTACAGCACAAGCCATTGCTGTTCTATTCAGGAAT
TTTTTTCCTGTGCCCATATCTTCAAGGCTTTTTCCCACTTTCTCCTCTAT
AAGTTTCAGTGTCTCTGGTTTTATGGGGAGTTCCTTAATCCACTTAGATT
TGACCTTAGTACAAGGAGATAGGAATGGATCAATTTGCATTCTTCTACAT
GATAACCACCAGTTGTGCCAGCACCATTTGTTCAAAATGTTGTCTTTCTT
CCACTGGATAGTTTTAGGTCCCTTGTCAAAGATCAAGTGACCATAGGTGT
GTGGGTTTATTTCTGGGTCTTCAATTCTATTCCATTGGTCTACTTGTCTG
TTGCTATATCAGTACCATGCCATTTTTATCACAATTGCTCTGTAGTACAG
CTTTANGTCCGGCATGGTGATTCCACCAGAGGGTTCTTTATCCTTGAGAA
G
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXATATGCAAACAACTCTACACCCTTAAAATTTTGGATAGATT
TTCAAAGACACATGGTGGGGGGGGGGACAGAAAAACTTTGATTAGAGAAA
CATGTTTGCACAATAATACATTACAACAATAGCATGAATCAGAATAAGTC
CTTCCACCACTTACAGGTCCTATTGATGCTCTGAGCATGGTACTAAGAAG
CTTGTGCCTATTTCCTCTAAGGAAGAGGATGAAAATTATAAAGGTAGAGA
ATATTCACCTAGCAGTTCCAGATCAGTTCACCAAGGCAGAAAGATAAGAC
AGATAACAAGCTTTCTTTTTTTTTTTTTTTTTAAGATTTATTTATTATAT
GTAAGTACACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGAGTCAGATC
TCATTACGGATGGTTGTGAGTCACCATGTGGTTGCTGGGATTTGAACTCT
GGACCTTCGGAAGAGCAGTCGGGTGCTCTTACCCACTGAGCCATCTCACC
AGCCCCCAGCTTTCTTTTTTTAACAGGAAGCTGTTCTGTTAATGACAGGT
GGGCTTAGAGAAGACACGGAGCAAAGAGTTGGACACACACTCAGAAATTT
CTAGAGAGTAATACCATTTGAAATAGTTGAGTTTATACATTAATCACTTT
CCTGTACTGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no502_i11.g1 MSMg01no502_i11.g1 CHROMAT_FILE:
MSMg01no502_i11.g1 PHD_FILE: MSMg01no502_i11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:35 2005
         (646 letters)



>mm_chr3_14125543_14126591
          Length = 1049

 Score =  534 bits (276), Expect = e-155
 Identities = 307/318 (96%), Gaps = 5/318 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   atatgcaaacaactctacacccttaaaattttggatagattttcaaagacaca--tggtg 58
           |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| |
Sbjct: 201 atatgcaaacaactctacacccttaaaattttggatagattttcaaagacacatttgggg 260

                                                                       
Query: 59  gggg-gggggacagaaaaactttgattagagaaacatgtttgcacaataatacattacaa 117
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggggagggggacagaaaaactttgattagagaaacatgtttgcacaataatacattacaa 320

                                                                       
Query: 118 caatagcatgaatcagaataagtccttccaccacttacaggtcctattgatgctctgagc 177
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 321 caatagcatgaatcagaataagtccttccaccacttacaggtcccattgatgctctgagc 380

                                                                       
Query: 178 atggtactaagaagcttgtgcctatttcctctaaggaagaggatgaaaattataaaggta 237
           |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |
Sbjct: 381 atggtactaagaagcttgtgcctagttcctctaaggaagaggatgaaaattacaaagg-a 439

                                                                       
Query: 238 g-agaatattcacctagcagttccagatcagttcaccaaggcagaaagataagacagata 296
           | |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ggagaaaattcacttagcagttccagatcagttcaccaaggcagaaagataagacagata 499

                             
Query: 297 acaagctttctttttttt 314
           ||||||||||||||||||
Sbjct: 500 acaagctttctttttttt 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1049
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1039
Effective search space:   660804
Effective search space used:   660804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)