Query= MSMg01no502_k20.b1 MSMg01no502_k20.b1 CHROMAT_FILE:
MSMg01no502_k20.b1 PHD_FILE: MSMg01no502_k20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:46 2005
(649 letters)
>mm_chr3_66948361_66949410
Length = 1050
Score = 1218 bits (630), Expect = 0.0
Identities = 645/650 (99%), Gaps = 1/650 (0%)
Strand = Plus / Plus
Query: 1 tcatgctttctaggtttttgttgtagtttgtgttgagtaaagagatttcttatctatgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcatgctttctaggtttttgttgtagtttgtgttgagtaaagagatttcttatctatgtt 260
Query: 61 aagaaggtactttcatgaaatacctctttcatttctttttatactttgaagatgtgaggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagaaggtactttcatgaaatacctctttcatttctttttatactttgaagatgtgaggt 320
Query: 121 caagaacaacaaaatgccttagtttttaacataatatattaataattgttttaatcgagg 180
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 caagaacaacaaaatgccttagtttttaacataatatatgaataattgttttaatcgagg 380
Query: 181 aagttaaaagaaactagttttggaaattttagttcatttggttaaactttagttcattta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagttaaaagaaactagttttggaaattttagttcatttggttaaactttagttcattta 440
Query: 241 attaaatatttagcaattcaaa-aaatgcttttgctacaataagtatgtttatcttatag 299
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 441 attaaatatttagcaattcaaataaatgcttttgctacaataagtatgtttatcttatag 500
Query: 300 tactggtaattgggatattttattacacttatgtaattgagatgtagtataaaatacttc 359
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tactagtaattggaatattttattacacttatgtaattgagatgtagtataaaatacttc 560
Query: 360 ctcaaatactttcacttactaaaagattgcttatcacatttcaaaagtgaaggttgaatt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctcaaatactttcacttactaaaagattgcttatcacatttcaaaagtgaaggttgaatt 620
Query: 420 taccaatacatatttctacagttgtaagttacacttcctggggcagaggtctagctgcat 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taccaatacatatttctacagttgtaagttacacttcctggggcagaggtctagctgcat 680
Query: 480 ggaagagtttgtgcttaccacacccgaggcttacaccatctttcccacactacatgtgca 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggaagagtttgtgcttaccacacccgaggcttacaccatctttcccacactacatgtgca 740
Query: 540 taaacatgtgatgtggtagattacagacatatgcaattcagaacatagggtcgctccatg 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 taaacatgtgatgtggtagattacagacatatgcaattcagaacatagggtcgctccatg 800
Query: 600 tgatccctgtcaactcttgattgggcttttctgctaaagatttgctgttc 649
|||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 801 tgatccctgtcaactcttgattgggcttttctgctagagatttgctgttc 850
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1050
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1040
Effective search space: 664560
Effective search space used: 664560
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no502_k20.g1 MSMg01no502_k20.g1 CHROMAT_FILE:
MSMg01no502_k20.g1 PHD_FILE: MSMg01no502_k20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:47 2005
(581 letters)
>mm_chr3_67012266_67013246
Length = 981
Score = 1042 bits (539), Expect = 0.0
Identities = 569/581 (97%), Gaps = 4/581 (0%)
Strand = Plus / Minus
Query: 1 atctgtctgcctgtctacctgtctgtctgactatctatcttctttttctattcatctgtg 60
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 914 atctgtctgcctgt----ctgtctgtctgactatctatcttctttttctattcatctgtg 859
Query: 61 gacatctaggctgggaccatttctgactatcaagaattatgcagtatgaaatacagaggt 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 858 gacatctaggctgggaccatttctgactatcaagaattatgcagtattaaatacagaggt 799
Query: 121 aaaggtctgtctgtggtactcatctgaagtctttctggtatatagcctgggtcataagta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 aaaggtctgtctgtggtactcatctgaagtctttctggtatatagcctgggtcataagta 739
Query: 181 tgtctattcctagattcttgaatagcttgtattctaatttccacagcatacaaataaatt 240
||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct: 738 tgtctattcctagtttcttgaatagcttgtattataattttcacagcatacaaataaatt 679
Query: 241 aaggtttaaaatttcagatcattagtttctccacaaatgacttatctattagagtttaat 300
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 aaggttgaaaatttcagatcattagtttctccacaaatgacttatctattagagtttaat 619
Query: 301 agttgtaattttattatggtgctatgatagagacaaaaatgacctactagggaaaggaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 agttgtaattttattatggtgctatgatagagacaaaaatgacctactagggaaaggaaa 559
Query: 361 taggagaaaacaaaacaaaacataacatgagcagaaagttctaatgcaaacaggacatag 420
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 558 taggagaaaacaaaacaaaacaaaacatgagcagaaagttctaatgcaaacaggacatag 499
Query: 421 acaaggaatgcaaggagtaattatagtttacagttatgaattttaagaaatgattcattt 480
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 498 acaaggaatgtaaggagtaattatagtttacagttatgaattttaagaaatgattctttt 439
Query: 481 agagtctgttggactcttgggcacatacccaaatgactctatattgtaccacagagacac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 agagtctgttggactcttgggcacatacccaaatgactctatattgtaccacagagacac 379
Query: 541 ctgtccaaatatgttcactgctgctttatttataatagcca 581
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 ctgtccaaatatgttcactgctgctttatttataatagcca 338
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 981
Length adjustment: 10
Effective length of query: 571
Effective length of database: 971
Effective search space: 554441
Effective search space used: 554441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
