BAC Information

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BAC

Clone NameMSMg01-502L12
Chromosome3 (Build37)
Map Location 27,149,831 - 27,150,233
singlet/doubletsinglet
Overlap genenone
Upstream geneNlgn1, LOC229152, Spata16, LOC665258, Ect2, Aadacl1
Downstream geneLOC100040527, Tnfsf10, Ghsr, Fndc3b, E030011K20Rik, Pld1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-502L12.T7 (MSMg01no502_l12.b1)MSMg01-502L12.TJ (MSMg01no502_l12.g1)
ACCAG578007AG578008
length724740
length of high quality
(start - end)
321 (306 - 626)623 (74 - 696)
definitionCHROMAT_FILE: MSMg01no502_l12.b1 PHD_FILE: MSMg01no502_l12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:49 2005CHROMAT_FILE: MSMg01no502_l12.g1 PHD_FILE: MSMg01no502_l12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCTATACGATTNCACTTTCAAACTAGGTCCGCGGAATTCTTTGTTACTAA
AACCCGAGGAATACCGAAAGGCTGAGAAGCACCTGAAAAAATGTTCAACA
TCCTTAATTATCAGAGAAATGCAAATCAAACAACCCTGATATTCCATCTC
ACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTG
GTTAGGATGTGGAGAAAGAGGAACACTCCTCTATTGTTGGTGGGATTGCA
AGCTTGTACAACCACTCTGGAAATCAGTCTAGCGGTTCCTCAGAAATTTT
GATTTAGTACTACCGGAGGATCCCGCAATACCTCTTCTGGGCATATATCC
AGAAGATGTCCCAACCGGTAAGAAGGACACATGCTCCACTATGTTCATAG
CAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCA
ACAGAGGAATGGATACAAAAAATGTGGTACATTTACACAATGGAGTACTA
CTCAGCTATTAAAAAGAATGAATTTACAAAATTCCTAGGCAAATGGTTGG
ACCTGGAGGGCATCATCCTGAGTGAGGTAACCCAATCACAAAAGAACTCA
AATGAAATGTACTCACTGATAAGTGGATATTAGCCCAGAAACTTAGTATA
GCAAGATATAAGGTACAAAATGCAAAACACATGAAACTGAAGAAGAACGA
AGACCAAAGTGTGGACACTTTGTT
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAACAGTTTTCCTCTACTGCCAAACCAT
ACATAATTTAATTTATTCTGTGACAGAATATGACACGGCTTCTTGTTTAT
CTTTTGTAAATAAAAGAAAACTACTGGGAAATGTTTTCTTTTCAATTTTA
AGGAAAATAGTGTATGCGTGAGGTGGCTAGCAACATTGACTTTCACGGGC
GCCCTCTGCTGGCACCTGCTGGAGACATTTTTATTTTTATTTTTATTTTT
ATCTTTATATATCTATTGTGGACTTCAGCGTTTTGTTTTGATTTGATTTG
TTTTGTTTTCACGAGCAATGATTAAAGCACTGGGTAGAAAGAAAACACCT
GCAAAGAAAAGTCCCGTAAACCAAGAATGATAGGACATACCTAAATGGCA
GCACCTAGGAGGCTCAGGCAGGGGGCTTATGGGGAGTTCCTGGCCAGCCT
GAGCTAGCACACAGTGCGTTTGATTTAATATGGGACACAAAGTGAAAGCT
TGTCTTACACAACAAGAAAGGAGTGAAGGGACCCGATTAAGTTTGCTGAG
CACTTGCCTAGCACACGGGAAGCTACATAAACCTGGTGTGAAGGCACACA
AACTGTCATCGCAACACTGGAGGTGGAGTGGAAAATCACAAGCCCAACCT
GATCTTCAGCTTCGCAGGGAGTTTGCAGTCAGATTCAGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no502_l12.g1 MSMg01no502_l12.g1 CHROMAT_FILE:
MSMg01no502_l12.g1 PHD_FILE: MSMg01no502_l12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:50 2005
         (623 letters)



>mm_chr3_27149831_27150853
          Length = 1023

 Score =  745 bits (385), Expect = 0.0
 Identities = 398/403 (98%), Gaps = 2/403 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aacagttttcctctactgccaaaccatacataatttaatttattctgtgacagaatatga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 aacagttttcctctactgccaaaccatacataatttaatttattctgtgacagaatatga 344

                                                                       
Query: 61  cacggcttcttgtttatcttttgtaaataaaagaaaactactgggaaatgttttcttttc 120
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 cacggcttcttgttcatcttttgtaaataaaagaaaactactgggaaatgttttcttttc 284

                                                                       
Query: 121 aattttaaggaaaatagtgtatgcgtgaggtggctagcaacattgactttcacgggcgcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 aattttaaggaaaatagtgtatgcgtgaggtggctagcaacattgactttcacgggcgcc 224

                                                                       
Query: 181 ctctgctggcacctgctggagacatttttatttttatttttatttttatctttatat--a 238
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |  |
Sbjct: 223 ctctgctggcacctgctggagacatttttatttttatttttatttttatttttatcttta 164

                                                                       
Query: 239 tctattgtggacttcagcgttttgttttgatttgatttgttttgttttcacgagcaatga 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163 tctattgtggacttcagcgttttgttttgatttgatttgttttgttttcacgagcaatga 104

                                                                       
Query: 299 ttaaagcactgggtagaaagaaaacacctgcaaagaaaagtcccgtaaaccaagaatgat 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103 ttaaagcactgggtagaaagaaaacacctgcaaagaaaagtcccgtaaaccaagaatgat 44

                                                      
Query: 359 aggacatacctaaatggcagcacctaggaggctcaggcagggg 401
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43  aggacatacctaaatggcagcacctaggaggctcaggcagggg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1023
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1013
Effective search space:   620969
Effective search space used:   620969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)