BAC Information

Click to search

BAC

Clone NameMSMg01-502P02
Chromosome3 (Build37)
Map Location 120,762,790 - 120,785,278
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream gene2510027J23Rik, LOC435752, Tmem56, LOC668778, LOC668780, Alg14, Ppia-ps3_1234.1, Cnn3, Slc44a3, A730020M07Rik, 4930432M17Rik, F3, Abcd3, LOC100043298, Arhgap29, Abca4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-502P02.T7 (MSMg01no502_p02.b1)MSMg01-502P02.TJ (MSMg01no502_p02.g1)
ACCAG578176AG578177
length744699
length of high quality
(start - end)
587 (59 - 645)387 (313 - 699)
definitionCHROMAT_FILE: MSMg01no502_p02.b1 PHD_FILE: MSMg01no502_p02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:05 2005CHROMAT_FILE: MSMg01no502_p02.g1 PHD_FILE: MSMg01no502_p02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:05 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,784,692 - 120,785,278)(120,762,790 - 120,763,176)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGA
CATGTTTCCCCCTTCCTTTGGCCTCTCCTCATGCTTCTGTTTGTTTTCCT
GGCTAAGGGAAGCTGCTATAAGAGGCAGTGCCTGGCAAGCAGATGCGACT
GTGTCAGAGCTGTTTAGTCAGAACTCACAGGGCTGCCTGATATACAGTGC
CATCGGGTTGCTGCTGAGGGAGACACCTATGATTCCATTAATTATTTAGG
GATCCAACATAGCCACAATTAATGAATTTGAATGTATTACAATGATCTTA
ATCAGAGGAACAGATGCAAAATGACAATATGATACACACAATTTTTCCCC
AGCGAATTGCACACTATTAAGGTCTGTTGCAGTCACTGAATCCAGATGTT
TCTATACACTTACTGACCAGGAAAGATCCCGGTTTCATTACATGAAAGAA
AATAAGTTCATCCTGTCATCTCGCAGAGTTAAAGTGGGATCCAATTCAGC
AGCTGGCGAGGCGGCTAAGTTGGTTTGCAATAATCCCGCTTCTGCTGCAG
GACTGGCTGAGTGGCGAAGTCTATCGCACCCGGGCTTAGCATTCACTTTA
CATTATCTTTATGCTTTCTCAGATGAGATGGTTTGCTCCTGCTCCAAAAG
CCTCTGATGGACTAAACAAGCTTTATACACACATCACACGAGAAGAAATT
GACCTACTTTCGTGGTGGGTAAATTCATTAAGATCAGGATAATG
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAG
CGAGAAAAGGGGCTCCGCACAGCAATTGTTCCATTTTCTGTATTTCATAA
CCTGCAATTTTGAAGCCATGCTTGGTACACACGCTTGTAAAATAGTCATA
TCAGATAAAAGCAGAGGGATGCTAAACTATTGGAAAATAAATCAAATTCT
CAGCAAGCAGTTATATCCATCATGTCGCAGCGAGCGTATGTATAGTTTAA
GCTCTGAGCGCACAGTCTATCCATTGTAATGATTTGGGGTCAGGATCCTG
CCATAGGTANNTAGCATTCACTAAGAAGTAAACCCAGGAGTGTAGCAGGG
AAGAGCGCGGCGCTTTAGCTTTTGGTCCAGGAAACTGCCCTCCATGCATT
TGTTTGAGGGCAGACACTGTGTGTCTATAACAGCTCAGAGAAGAATTAAC
ACATGCATGTATCTTGAGCATTTCTAAGACGCTTGCATCCGACATTACCT
TGCTTGATCTTCAAGGGAACCTGGGAAGAAAAAAATAGGGGAAAGCATCC
ACGAGTTACTACCCCAGAGACACCTTCAGAAACATATGTGCAAGGACATG
GAAGAAAATATCCAAAAATGCAACCCACACCCAAATCATTTCCAAACTGA
GGCCATCCTGTGATAATGACCCATTCAGTGGTACCTGGCCTTGCACTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no502_p02.b1 MSMg01no502_p02.b1 CHROMAT_FILE:
MSMg01no502_p02.b1 PHD_FILE: MSMg01no502_p02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:05 2005
         (587 letters)



>mm_chr3_120784492_120785478
          Length = 987

 Score = 1127 bits (583), Expect = 0.0
 Identities = 586/587 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccccttcctttggcctctcctcatgcttctgtttgttttcctggctaagggaagctgcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 ccccttcctttggcctctcctcatgcttctgtttgttttcctggctaagggaagctgcta 728

                                                                       
Query: 61  taagaggcagtgcctggcaagcagatgcgactgtgtcagagctgtttagtcagaactcac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 taagaggcagtgcctggcaagcagatgcgactgtgtcagagctgtttagtcagaactcac 668

                                                                       
Query: 121 agggctgcctgatatacagtgccatcgggttgctgctgagggagacacctatgattccat 180
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 667 agggctgcctgatatacagtgccatcaggttgctgctgagggagacacctatgattccat 608

                                                                       
Query: 181 taattatttagggatccaacatagccacaattaatgaatttgaatgtattacaatgatct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 taattatttagggatccaacatagccacaattaatgaatttgaatgtattacaatgatct 548

                                                                       
Query: 241 taatcagaggaacagatgcaaaatgacaatatgatacacacaatttttccccagcgaatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 taatcagaggaacagatgcaaaatgacaatatgatacacacaatttttccccagcgaatt 488

                                                                       
Query: 301 gcacactattaaggtctgttgcagtcactgaatccagatgtttctatacacttactgacc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 gcacactattaaggtctgttgcagtcactgaatccagatgtttctatacacttactgacc 428

                                                                       
Query: 361 aggaaagatcccggtttcattacatgaaagaaaataagttcatcctgtcatctcgcagag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 aggaaagatcccggtttcattacatgaaagaaaataagttcatcctgtcatctcgcagag 368

                                                                       
Query: 421 ttaaagtgggatccaattcagcagctggcgaggcggctaagttggtttgcaataatcccg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 ttaaagtgggatccaattcagcagctggcgaggcggctaagttggtttgcaataatcccg 308

                                                                       
Query: 481 cttctgctgcaggactggctgagtggcgaagtctatcgcacccgggcttagcattcactt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 cttctgctgcaggactggctgagtggcgaagtctatcgcacccgggcttagcattcactt 248

                                                          
Query: 541 tacattatctttatgctttctcagatgagatggtttgctcctgctcc 587
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 tacattatctttatgctttctcagatgagatggtttgctcctgctcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 987
Length adjustment: 10
Effective length of query: 577
Effective length of database: 977
Effective search space:   563729
Effective search space used:   563729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no502_p02.g1 MSMg01no502_p02.g1 CHROMAT_FILE:
MSMg01no502_p02.g1 PHD_FILE: MSMg01no502_p02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:05 2005
         (387 letters)



>mm_chr3_120762590_120763376
          Length = 787

 Score =  717 bits (371), Expect = 0.0
 Identities = 383/387 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcattcactaagaagtaaacccaggagtgtagcagggaagagcgcggcgctttagcttt 60
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 agcattcactaagaagtaaacccaggagtgtagcaggaaagagcgcggcgctttagcttt 260

                                                                       
Query: 61  tggtccaggaaactgccctccatgcatttgtttgagggcagacactgtgtgtctataaca 120
           |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 261 tggtccaggaaactgccctccatgcatttgtttgagggcaaacactgtgtgtctgtaaca 320

                                                                       
Query: 121 gctcagagaagaattaacacatgcatgtatcttgagcatttctaagacgcttgcatccga 180
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcacagagaagaattaacacatgcatgtatcttgagcatttctaagacgcttgcatccga 380

                                                                       
Query: 181 cattaccttgcttgatcttcaagggaacctgggaagaaaaaaataggggaaagcatccac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cattaccttgcttgatcttcaagggaacctgggaagaaaaaaataggggaaagcatccac 440

                                                                       
Query: 241 gagttactaccccagagacaccttcagaaacatatgtgcaaggacatggaagaaaatatc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagttactaccccagagacaccttcagaaacatatgtgcaaggacatggaagaaaatatc 500

                                                                       
Query: 301 caaaaatgcaacccacacccaaatcatttccaaactgaggccatcctgtgataatgaccc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caaaaatgcaacccacacccaaatcatttccaaactgaggccatcctgtgataatgaccc 560

                                      
Query: 361 attcagtggtacctggccttgcactca 387
           |||||||||||||||||||||||||||
Sbjct: 561 attcagtggtacctggccttgcactca 587


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 787
Length adjustment: 9
Effective length of query: 378
Effective length of database: 778
Effective search space:   294084
Effective search space used:   294084
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)