Query= MSMg01no503_f08.b1 MSMg01no503_f08.b1 CHROMAT_FILE:
MSMg01no503_f08.b1 PHD_FILE: MSMg01no503_f08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:35 2005
(601 letters)
>mm_chr3_148032947_148033946
Length = 1000
Score = 1091 bits (564), Expect = 0.0
Identities = 590/600 (98%), Gaps = 4/600 (0%)
Strand = Plus / Plus
Query: 5 gaattcttggtgttctgtgagctatgctgtacaatcagaaacacacatttctacaatacc 64
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttggtgtgctgtgagctatgctgtacaatcagaaacacacatttctacaatacc 264
Query: 65 atggatgtcaggttgagctcggggactcatcaaagttttcttgtttcttcagatagattc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atggatgtcaggttgagctcggggactcatcaaagttttcttgtttcttcagatagattc 324
Query: 125 tctatttaggagtaaattcaatggtgatggaaatgaccagttagccaataaacaccaatt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tctatttaggagtaaattcaatggtgatggaaatgaccagttagccaataaacaccaatt 384
Query: 185 tcataccagctgaggttcttgtgtcctagcttctcagaaaacaagctctagtcaaggcca 244
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 385 tcataccagctgaggttcttgtgtcctagcttctcagaaaacaa-ctctagtcaaggcca 443
Query: 245 aagtgggaaacagcaaagagaatgatgatgtctggatactcttaaaaataatattaggat 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aagtgggaaacagcaaagagaatgatgatgtctggatactcttaaaaataatattaggat 503
Query: 305 ttatttattttgtttcgtgtgtatgaaggtatcgcctgcacatatgtttgtgtaccacat 364
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttatttattttgtttcctgtgtatgaaggtatcgcctgcacatatgtttgtgtaccacat 563
Query: 365 gcccatggaagtcagaagaagttactgactcccctgaagctggggtttcagatggttgtg 424
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 564 gcccatggaagtcagaagaagttactgactcccctgaagctgaggtttcagatggttgtg 623
Query: 425 agtcaccgtgttgatgctttggtactgaactcatgttgtctacaagagcaacccgtactc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 agtcaccgtgttgatgctttggtactgaactcatgttgtctacaagagcaacccgtactc 683
Query: 485 ttaaccactgaagcatctttctagccctgaaaatgtttttataaatcgtagtcatctcaa 544
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 684 ttaaccactgaagcatctttctagccctgaaaatgtttttataaagagtagtcatctcaa 743
Query: 545 tgatcaatactttctattgcttctcttat---aaaaaaaaatctttccagatatctgtat 601
||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct: 744 tgatcaatactttctattgcttctcttattaaaaaaaaaaacctttccagatatctgtat 803
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 1000
Length adjustment: 10
Effective length of query: 591
Effective length of database: 990
Effective search space: 585090
Effective search space used: 585090
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no503_f08.g1 MSMg01no503_f08.g1 CHROMAT_FILE:
MSMg01no503_f08.g1 PHD_FILE: MSMg01no503_f08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:35 2005
(527 letters)
>mm_chr3_148172766_148173692
Length = 927
Score = 946 bits (489), Expect = 0.0
Identities = 514/527 (97%), Gaps = 10/527 (1%)
Strand = Plus / Minus
Query: 1 ttacatgatttggcttaaggattaaaaaaaagtgtgtcaagtcagaggaggctgcagagg 60
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 927 ttacatgatttggcttaaggat--aaaaaaagtgtgtcaagtcagaggaggctgcagagg 870
Query: 61 gacggacttcagccttgatcacctttttttattctttttgtggttttgagaaagtgaaac 120
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 869 ggcggacttcagccttgatcacctttttttattctttttgtggttttgagaaagtgaaac 810
Query: 121 aaaccatggtaggaaacagataaaaaggtcaggggaagagatagcatctcctttctcctg 180
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 809 aaaccatggtaggaaacagataaaaaggtcaggggaagagatagcatctcctctctcctg 750
Query: 181 attagtggggagggtaattatgcaagagctcaagagcagctttcttcctcttctcttact 240
||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 749 attagtggggagggtaattatgcaagagc------g--gctttcttcctcttctcttact 698
Query: 241 ttggcaggaaactacgcatcctatataatcaaaaaccttctgaatgctgttttccacatc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 ttggcaggaaactacgcatcctatataatcaaaaaccttctgaatgctgttttccacatc 638
Query: 301 gagatgtctacggtctattgctagctggactactttcacatggggcttgtgttgggatga 360
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 637 gagatgtctacggtctattgctagctggactactttcacatgaggcttgtgttgggatga 578
Query: 361 catgtctgcctgaggggaccatactgggtagaagacaaacagagagaactttttacactt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 catgtctgcctgaggggaccatactgggtagaagacaaacagagagaactttttacactt 518
Query: 421 tcatagtttctttgtgcattttaagttttgcataggtcaattaactctttcatttattat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 tcatagtttctttgtgcattttaagttttgcataggtcaattaactctttcatttattat 458
Query: 481 taatctctggctagatctttcttaatatttaattgtgcttctcatct 527
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 taatctctggctagatctttcttaatatttaattgtgcttctcatct 411
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 927
Length adjustment: 10
Effective length of query: 517
Effective length of database: 917
Effective search space: 474089
Effective search space used: 474089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
