BAC Information

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BAC

Clone NameMSMg01-503N15
Chromosome3 (Build37)
Map Location 144,353,477 - 144,596,897
singlet/doubletdoublet
Overlap geneSh3glb1, LOC668890, Clca1, Clca2, Clca4, EG622139, AI747448
Upstream geneEG621809, LOC100039938, LOC100039952, Lmo4, LOC545572, Hs2st1, Sep15, LOC435761
Downstream geneClca6, Clca3, Clca5, Odf2l, Col24a1, 2410019A14Rik, Cyr61, Ddah1, LOC100040331, Bcl10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-503N15.T7 (MSMg01no503_n15.b1)MSMg01-503N15.TJ (MSMg01no503_n15.g1)
ACCAG578870AG578871
length722724
length of high quality
(start - end)
614 (84 - 697)574 (87 - 660)
definitionCHROMAT_FILE: MSMg01no503_n15.b1 PHD_FILE: MSMg01no503_n15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:31:15 2005CHROMAT_FILE: MSMg01no503_n15.g1 PHD_FILE: MSMg01no503_n15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:31:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(144,353,477 - 144,354,090)(144,596,324 - 144,596,897)
sequence
TGTTTTTTTCCTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAG
AGAATCCGCGGAATTCCTCAACTTTCAATTCACAGCAACGTTTGCTGATG
GATAGCATGGTCCTCACAGCAATTCTCTAGTTCCAAATGTGTCATTAGCA
ACCTCCAGAGAGCGCGCCACATAACCAAAGATCCTGCTGAAGACAGACTG
CATCCACTGCATGACTTGGCCTATAATGAAGGCTGTCGCACCAATCTGTA
TTTTATACACAATCATTGTTCAACAACAAATCTTTACTGTAGTGTAGTAT
CTTCTCAATGGATGCAATTCTGATTGGTCTTCAAATTTTGGCAACTGAAT
AATCTGAAGATTATTCTTAGTGAATGAATTTGTCCCCAGTGTTCTACAAT
CTTAACAAAATTATGAAATAAGGTAATACTTTTCAAGACTCAGGTTTAAA
AGAAACTATCCAGTAGTGTAATAAACGTAAATAAACCAAACCCAACCCAA
ACCAAGCAAAACTCCAAAGCCAAGAGACCCTAGTAAGGCCTAGTATTTAA
GTCATCTGATTCCTATTGGGCATCAAGGTAAAAAGGAGTTTTTACTTTAT
TCTTTGGCTATTGTATCTAATAAATGAGTCACTGGTATCATGCACAATAA
ATTTATTTTGCATAAAAGAAAAAGCTTCCTGTTAATGAAAAATTCAGTAG
ATAAGAATCCTTTCATTTTTTN
CCCTTTTTTTACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCAGAGATTTATGC
TAATCAGGTGTTCTTAAAGGCAGAATTCACAAAGCTATGGCACTTCCTGC
TTTTGTCCCATTGGGAGCAAAAAAAACACCCTGATGTACTTCCTGCCTAT
GTATCTCCCACCTATGTGTGACCAGGCATATCCTATGCAGTTGGGGCAAC
CAAATTTGCATACTGAAGTGAAAATATGTGACTTGTTATCCTTCATGAGC
AACAGCCCCAGCATTCCAGAAAGTTTTCTGCCCATGGCTAGGTGGGGCTT
ACAGGGTAACTTTAGTTCTTACAGTATGTTCCTGGCATACTCATTTTTCT
ATAAGGAAGATATAAGGAACTTTTTTATGATAAATTTGACATGGGGAAGT
ACAAATAAGTTTTTTATGGTTCTTCAGAGAAAATTATTGTTGGTCCAATA
AAATGTCTGAGACACAAAGTGAACAGAAGAGGAAATTATTAACACAGTAA
AGATACGCTGTTTATCTAAATTGGCAGAACTCAAGCTTCCTTCTAAATAT
CTATGCACACCCATAGACAACTGCCATGCTCAGCCTAGCTCAGAGAAGCC
TTCCTCTGCAGTGACTAGAGAGAATGCAGGAACTTTGTGGCTACATAAAG
TGCTGAGAGTGCATGATGGTTGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no503_n15.b1 MSMg01no503_n15.b1 CHROMAT_FILE:
MSMg01no503_n15.b1 PHD_FILE: MSMg01no503_n15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:15 2005
         (614 letters)



>mm_chr3_144353277_144354290
          Length = 1014

 Score = 1149 bits (594), Expect = 0.0
 Identities = 609/614 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcaacgtttgctgatggatagcatggtcctcacagcaattctctagttccaaatgtgtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcaacgtttgctgatggatagcatggtcctcacagcaattctctagttccaaatgtgtc 260

                                                                       
Query: 61  attagcaacctccagagagcgcgccacataaccaaagatcctgctgaagacagactgcat 120
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attagcaacctccagagcgcgcgccacataaccaaagatcctgctgaagacagactgcat 320

                                                                       
Query: 121 ccactgcatgacttggcctataatgaaggctgtcgcaccaatctgtattttatacacaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccactgcatgacttggcctataatgaaggctgtcgcaccaatctgtattttatacacaat 380

                                                                       
Query: 181 cattgttcaacaacaaatctttactgtagtgtagtatcttctcaatggatgcaattctga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cattgttcaacaacaaatctttactgtagtgtagtatcttctcaatggatgcaattctga 440

                                                                       
Query: 241 ttggtcttcaaattttggcaactgaataatctgaagattattcttagtgaatgaatttgt 300
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttggtcatcaaattttggcaactgaataatctgaagattattcttagtgaatgaatttgt 500

                                                                       
Query: 301 ccccagtgttctacaatcttaacaaaattatgaaataaggtaatacttttcaagactcag 360
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccccagtgttctgcaatcttaacaaaattatgaaataaggtaatacttttcaagactcag 560

                                                                       
Query: 361 gtttaaaagaaactatccagtagtgtaataaacgtaaataaaccaaacccaacccaaacc 420
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 561 gtttaaaagaaactatccagtagtgtaataaacataaataaaccaaacccaacccaaacc 620

                                                                       
Query: 421 aagcaaaactccaaagccaagagaccctagtaaggcctagtatttaagtcatctgattcc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aagcaaaactccaaagccaagagaccctagtaaggcctagtatttaagtcatctgattcc 680

                                                                       
Query: 481 tattgggcatcaaggtaaaaaggagtttttactttattctttggctattgtatctaataa 540
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tattgggcagcaaggtaaaaaggagtttttactttattctttggctattgtatctaataa 740

                                                                       
Query: 541 atgagtcactggtatcatgcacaataaatttattttgcataaaagaaaaagcttcctgtt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 atgagtcactggtatcatgcacaataaatttattttgcataaaagaaaaagcttcctgtt 800

                         
Query: 601 aatgaaaaattcag 614
           ||||||||||||||
Sbjct: 801 aatgaaaaattcag 814


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1014
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1004
Effective search space:   606416
Effective search space used:   606416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no503_n15.g1 MSMg01no503_n15.g1 CHROMAT_FILE:
MSMg01no503_n15.g1 PHD_FILE: MSMg01no503_n15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:15 2005
         (574 letters)



>mm_chr3_144596204_144597177
          Length = 974

 Score = 1079 bits (558), Expect = 0.0
 Identities = 570/574 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccagagatttatgctaatcaggtgttcttaaaggcagaattcacaaagctatggcacttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 ccagagatttatgctaatcaggtgttcttaaaggcagaattcacaaagctatggcacttc 635

                                                                       
Query: 61  ctgcttttgtcccattgggagcaaaaaaaacaccctgatgtacttcctgcctatgtatct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 634 ctgcttttgtcccattgggagcaaaaaaaacaccctgatgtacttcctgcctatgtacct 575

                                                                       
Query: 121 cccacctatgtgtgaccaggcatatcctatgcagttggggcaaccaaatttgcatactga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 cccacctatgtgtgaccaggcatatcctatgcagttggggcaaccaaatttgcatactga 515

                                                                       
Query: 181 agtgaaaatatgtgacttgttatccttcatgagcaacagccccagcattccagaaagttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 514 agtgaaaatatgtgacttgttatccttcatgagcaacagccccagcattccagaaagttg 455

                                                                       
Query: 241 tctgcccatggctaggtggggcttacagggtaactttagttcttacagtatgttcctggc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 tctgcccatggctaggtggggcttacagggtaactttagttcttacagtatgttcctggc 395

                                                                       
Query: 301 atactcatttttctataaggaagatataaggaacttttttatgataaatttgacatgggg 360
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 394 atactcatttttctataaggaagatataaggaacttctttatgataaatttgacatgggg 335

                                                                       
Query: 361 aagtacaaataagttttttatggttcttcagagaaaattattgttggtccaataaaatgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 aagtacaaataagttttttatggttcttcagagaaaattattgttggtccaataaaatgt 275

                                                                       
Query: 421 ctgagacacaaagtgaacagaagaggaaattattaacacagtaaagatacgctgtttatc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 ctgagacacaaagtgaacagaagaggaaattattaacacagtaaagatacgctgtttatc 215

                                                                       
Query: 481 taaattggcagaactcaagcttccttctaaatatctatgcacacccatagacaactgcca 540
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 214 taaattggcagaactcaagcttccttctaaatatctatggacacccatagacaactgcca 155

                                             
Query: 541 tgctcagcctagctcagagaagccttcctctgca 574
           ||||||||||||||||||||||||||||||||||
Sbjct: 154 tgctcagcctagctcagagaagccttcctctgca 121


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 974
Length adjustment: 10
Effective length of query: 564
Effective length of database: 964
Effective search space:   543696
Effective search space used:   543696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)