BAC Information

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BAC

Clone NameMSMg01-504F12
Chromosome3 (Build37)
Map Location 79,332,792 - 79,333,048
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383883, LOC100041748, LOC100041716, LOC100041725, LOC100041766, Rapgef2, LOC100041741
Downstream geneLOC100041793, LOC667613, Ppid, Etfdh, 4930579G24Rik, Rxfp1, Tmem144, 1110032E23Rik, EG626797
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-504F12.T7 (MSMg01no504_f12.b1)MSMg01-504F12.TJ (MSMg01no504_f12.g1)
ACCAG579246AG579247
length754772
length of high quality
(start - end)
---258 (356 - 613)
definitionCHROMAT_FILE: MSMg01no504_f12.b1 PHD_FILE: MSMg01no504_f12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:31:55 2005CHROMAT_FILE: MSMg01no504_f12.g1 PHD_FILE: MSMg01no504_f12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:31:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCAAAGAGGAGCCGCG
GAATTCCAGGGTGCCTAGAATAGCGGAGCTGCTAGGACGATCTAAGCACG
AAAGAGGCGCCCGACCTTCTAAATACACTGCACTAAATTACACAAAGAAA
AGGAAGTAAGTCTTGCTGAGAGACTGCTCACTGTGGGCCCTGCTAATCAC
AGGTTCGAGCCCTAGGGCTGGAGAGATGCTTCAGGGTTTAAGAACACTTT
TTTTAGGTAGTTTGTTTCGAGACAGGCTTTCTCTGTGTAACCCTGACTGG
CCTTGCCCTGACAGATCCTTTTTCTTCTGCTTCCTGAGCGCTCGCAGTAG
GGGCATACTCCACCACCACCCGTCGAGAACTCTTGTTGCTTTTGCAGACG
ACTAGGGTTCATTTCCCAACACCCTCGTGCCAGCTCATTACCAGCCATAA
CTCTAGATCTCTCTGATCACACCCCCACTTCTGACCTGAACACCAGCCTA
CATATGGTGCACAAACACTTGCTTGTCCACATTGGTACACATATCATAAA
TTGTACAAGAGACGCACGGGACAACTGAGGAAACCACCTAAACTTGGAAA
GAACTGAGCTGGATCACATCCGGATGACTCATCCCATTCCCTAGGGGAAA
AACGCTTAACGTCTCCGTCTTGCGCAGAAGCTCGAGCTCTAGCTGTCTCC
TCTGTTGTGACCGCTACAATACATCCTCGTAGTTTCTTCATTCATTCAAC
CCTC
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXATGTCTTCGTCTAGAATTGACGCCCAGGTTCTTG
GACCTTGTTTCCCAAAGCTTACATTCCTTTAAAATAGTCCCATGTAGCAC
ACTGATCGCTCCTGGCAAGAGGGAGAGTGAGCCTTGGATCCTCCCTATTA
CTCACGACTCACATACCACGCTCCTTCTTCCAGGGCTAATGCTACTTACT
GTTTGACTTCTGTTCTTCCATAACGCGTCTCTCTCCCCATTGAGCAACAT
CGTGCACATGAATGTGTGTGTACGCTGTGAGTGCGTGTGTGTGGGTGTAT
GCGTATGTAGCACTGGGCCCGGGACTGCCAGTACTGCAGCAGCCCAGTGC
AGAAAGTGCATCCTAGTTCATAGAATTCCATAATCATGGTTTGCTAATAA
AGAATTCTTTCCTAAGAGCGCAGTTGAAATCTGGTAAATTTGCAGTATGC
AGGGTATATGGTATAGTTTTCAAATAGTTGTTTCTAACCTCTTTCTTTAA
ATGTAGATTGTAGCAAAGCTGCTGATTTTTAATTTTTCATTTTTTTCCTG
AAAACGCTGAGAAGCCATCGAATTGTTCCCGAGGGATCTTGGGAATGTTT
GCCAGCTGTATATGAGAAATACTCTCTCAAACCTAAGAAGAAGGGTGGCC
TGGCCTCTTCTTGTCTTTGGAGTGGAGAGGAACTTGAGTAAACACTTCTT
AGCCATTTGTGTTTTGCAGTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no504_f12.g1 MSMg01no504_f12.g1 CHROMAT_FILE:
MSMg01no504_f12.g1 PHD_FILE: MSMg01no504_f12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:55 2005
         (258 letters)



>mm_chr3_79332591_79333248
          Length = 658

 Score =  489 bits (253), Expect = e-143
 Identities = 256/257 (99%)
 Strand = Plus / Minus

                                                                       
Query: 2   gtagcactgggcccgggactgccagtactgcagcagcccagtgcagaaagtgcatcctag 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 gtagcactgggcccgggactgccagtactgcagcagcccagtgcagaaagtgcatcctag 399

                                                                       
Query: 62  ttcatagaattccataatcatggtttgctaataaagaattctttcctaagagcgcagttg 121
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 398 ttcatagaattccataatcatggtttgctaataaagaattctttcctaagagcgcaattg 339

                                                                       
Query: 122 aaatctggtaaatttgcagtatgcagggtatatggtatagttttcaaatagttgtttcta 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 aaatctggtaaatttgcagtatgcagggtatatggtatagttttcaaatagttgtttcta 279

                                                                       
Query: 182 acctctttctttaaatgtagattgtagcaaagctgctgatttttaatttttcattttttt 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 acctctttctttaaatgtagattgtagcaaagctgctgatttttaatttttcattttttt 219

                            
Query: 242 cctgaaaacgctgagaa 258
           |||||||||||||||||
Sbjct: 218 cctgaaaacgctgagaa 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 258
Length of database: 658
Length adjustment: 9
Effective length of query: 249
Effective length of database: 649
Effective search space:   161601
Effective search space used:   161601
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)