Query= MSMg01no505_g20.b1 MSMg01no505_g20.b1 CHROMAT_FILE:
MSMg01no505_g20.b1 PHD_FILE: MSMg01no505_g20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:33:20 2005
(622 letters)
>mm_chr3_95907507_95908528
Length = 1022
Score = 1180 bits (610), Expect = 0.0
Identities = 616/618 (99%)
Strand = Plus / Plus
Query: 5 gaattctattattactaaattgttagattgctgatgcttgggatttatgtcttgttgcgt 64
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctattaatactaaattgttagattgctgatgcttgggatttatgtcttgttgcgt 264
Query: 65 tttctatttccagtcttccagaatacagtgcttttacaacagtagggcttcaataagtaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttctatttccagtcttccagaatacagtgcttttacaacagtagggcttcaataagtaa 324
Query: 125 aggcattgagttatgctgtaatgttgtaaaaacacattgacaatgtgtttttacaacatt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aggcattgagttatgctgtaatgttgtaaaaacacattgacaatgtgtttttacaacatt 384
Query: 185 aactaaaaaactgactgtggcagggatgttactaagggagtattgttatgcaagtgaata 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aactaaaaaactgactgtggcagggatgttactaagggagtattgttatgcaagtgaata 444
Query: 245 tagcaaagggtacgttcacgtcaagagtgaaggaacaaggggaatgcatagctgggtggg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tagcaaagggtacgttcacgtcaagagtgaaggaacaaggggaatgcatagctgggtggg 504
Query: 305 gctggtttgtaagaagcgatgttcaattcagtctggttggtccaggattgcgtggagtaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gctggtttgtaagaagcgatgttcaattcagtctggttggtccaggattgcgtggagtaa 564
Query: 365 ctagaatttcaaccttctcaagtatttttatccttctcacctttcgaaagctactccgcc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctagaatttcaaccttctcaagtatttttatccttctcacctttcgaaagctactccgcc 624
Query: 425 agtctccatttcttcccttagggctggcgccaactgatgcgaccccaaagtcttaacagt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 agtctccatttcttcccttagggctggcgccaactgatgcgaccccaaagtcttaacagt 684
Query: 485 ccatgccgagctcccagctcccgctcaaaagtgcctccgcccgggggctcggggacgcga 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ccatgccgagctcccagctcccgctcaaaagtgcctccgcccgggggctcggggacgcga 744
Query: 545 gccaaaaacgcgcggggtcacgcgccgggcaagcgccaaaccagccacagccccaaagcg 604
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 745 gccaaaaacgcgcggggtcacgcgccgggcaagcgccaaaccggccacagccccaaagcg 804
Query: 605 gtcccgagggcggggctg 622
||||||||||||||||||
Sbjct: 805 gtcccgagggcggggctg 822
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1022
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1012
Effective search space: 619344
Effective search space used: 619344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no505_g20.g1 MSMg01no505_g20.g1 CHROMAT_FILE:
MSMg01no505_g20.g1 PHD_FILE: MSMg01no505_g20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:33:20 2005
(558 letters)
>mm_chr3_96086286_96087243
Length = 958
Score = 501 bits (259), Expect = e-146
Identities = 278/287 (96%), Gaps = 5/287 (1%)
Strand = Plus / Minus
Query: 1 ccagcacccacgctggcagctcttaacaataaccacctgtagctctgatgagcacacatt 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 301 ccagcacccacgctggcagctcttaacaataaccacctgtagctccgatgagcacacatt 242
Query: 61 cgacacacagacacatagataagcataaatctttttttttt-----aatagccttacaaa 115
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 241 cgacacacggacacatagataagcataaatcttttttttttttttaaatagccttacaaa 182
Query: 116 accacagctcttgtctcaaaagggatgagaggtagtttatcgtggaaccagtctgggtaa 175
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 181 accacagctcttgtctcaaaagggatgagaggtagtttatcgtggaaccagtctgggtga 122
Query: 176 gcagggcctgggaatataatcttaggactctccaaattccatgattcgatgcggtgccag 235
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gcagggcctgggaatacaatcttaggactctccaaattccatgattcgatgcggtgccag 62
Query: 236 ttgggtgaaggggcggcagatcacagtgaagtgaagagctctctgct 282
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttgggtgaaggggcggcagatcacagtgaagtgaagagctctctgct 15
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 958
Length adjustment: 10
Effective length of query: 548
Effective length of database: 948
Effective search space: 519504
Effective search space used: 519504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
