BAC Information

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BAC

Clone NameMSMg01-505H19
Chromosome3 (Build37)
Map Location 78,730,377 - 78,730,716
singlet/doubletsinglet
Overlap genenone
Upstream geneEG626461, LOC667526, LOC626479, LOC100041691, LOC383883, LOC100041748
Downstream geneLOC100041716, LOC100041725, LOC100041766, Rapgef2, LOC100041741, LOC100041793, LOC667613, Ppid, Etfdh, 4930579G24Rik, Rxfp1, Tmem144, 1110032E23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-505H19.T7 (MSMg01no505_h19.b1)MSMg01-505H19.TJ (MSMg01no505_h19.g1)
ACCAG580113AG580114
length759759
length of high quality
(start - end)		637 (73 - 709)603 (84 - 686)
definitionCHROMAT_FILE: MSMg01no505_h19.b1 PHD_FILE: MSMg01no505_h19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:33:25 2005CHROMAT_FILE: MSMg01no505_h19.g1 PHD_FILE: MSMg01no505_h19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:33:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNAATACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTCATTTGCGGAATACCGAATGGCAGAGAAGCACTTGAAA
AAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCT
GAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTG
ACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGT
TGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTT
CCTCAGAAAACTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCC
TGGGCATATATCCAGAAGATGCCCCAACAGGTAAGAAGGACACATGCTCC
ACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACC
TAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACA
CAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTA
GCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTC
ACAAAGAAACTCACACAATATGTATTCACTGATAAGTGGATATTAGCCCC
AAACCTAGGATACCCAAGATATAAGATATAATTTGCTAAACACATGANAC
TCAAGGAGAATGAAGACTGAAGTGTGGACACTATGCCCCTCCCTAGATTT
GGGAACAAA

ATTTTTACAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATACTTGGAAATGGTAT
GGAAGCTTGTTTGGCATGAGTTATGCTTAATTAAATTATCTAGGTATTAT
TTTAAGGGTAAGAGAATGATTTGCTCAGATGAAGGCAAACATCTTCTGTG
TTTCTCTATAGCACAGAAGTTTTTTTTTTCTCTTTGAGAAAAGTTCTTGC
TATGCAGCCTAGGCTGGTGTTTGTTATCTTCCTTTGAGGGTAGCATTATA
GGCACTGTGCAGGTTAGGCAGTTGTCATCTTGAAAGAAGCTAAAGTCATC
TTGAAAGAGAGACACTCAGCTAAGGAGTTGCTTCCATCACCTTAGCCTGT
AGGCAAGTTTGTGTGTGTGGGTATTTTCTTAATTCAATAAATTATTTATG
AGGGCCCAGCCCACTGTGGGAGGTACCACTCCTGGTTGGGTAGTCTCAGT
TGTTATAAGAAAGCAAGACAACACACCAGTAGAGAACAAGCCAATAAACA
GTGTTCCTCACGGTTTGTTTCTGTTCCTGCCTCGGGTTTCTGCTCTGACT
TCTCTCAGTGATGTCAGTAAGGTATAACATGAAATAAACAGTTTCTTTCC
TAAGTTGGTTTTGGTCACAGTGTTGGGGCCCTGGCACCAATACTAAAACA
TGCAAATTAATAATAAATGATCAACTGACAAGATAAAGAAATAGACAGTC
CCACAACCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no505_h19.g1 MSMg01no505_h19.g1 CHROMAT_FILE:
MSMg01no505_h19.g1 PHD_FILE: MSMg01no505_h19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:33:25 2005
         (603 letters)



>mm_chr3_78730377_78731379
          Length = 1003

 Score =  609 bits (315), Expect = e-178
 Identities = 335/343 (97%), Gaps = 3/343 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atacttggaaatggtatggaagcttgtttggcatgagttatgcttaattaaattatctag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 atacttggaaatggtatggaagcttgtttggcatgagttatgcttaattaaattatctag 281

                                                                       
Query: 61  gtattattttaagggtaagagaatgatttgctcagatgaaggcaaacatcttctgtgttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 gtattattttaagggtaagagaatgatttgctcagatgaaggcaaacatcttctgtgttt 221

                                                                       
Query: 121 ctctatagcacagaagttttttttttctctttgagaaaagttcttgctatgcagcctagg 180
           ||||||||||||||||   ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 220 ctctatagcacagaag---tttttgtctctttgagaaaagttcttgctatgcagcctagg 164

                                                                       
Query: 181 ctggtgtttgttatcttcctttgagggtagcattataggcactgtgcaggttaggcagtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163 ctggtgtttgttatcttcctttgagggtagcattataggcactgtgcaggttaggcagtt 104

                                                                       
Query: 241 gtcatcttgaaagaagctaaagtcatcttgaaagagagacactcagctaaggagttgctt 300
           |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 103 gtcagcttgaaagaagctaaagtcatcttgaaagagagacactcagataaggagttgctt 44

                                                      
Query: 301 ccatcaccttagcctgtaggcaagtttgtgtgtgtgggtattt 343
           ||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 43  ccatcaccttagcctgtaggcaagtgtctgtgtgtgggtattt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1003
Length adjustment: 10
Effective length of query: 593
Effective length of database: 993
Effective search space:   588849
Effective search space used:   588849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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