Query= MSMg01no505_l12.b1 MSMg01no505_l12.b1 CHROMAT_FILE:
MSMg01no505_l12.b1 PHD_FILE: MSMg01no505_l12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:33:41 2005
(666 letters)
>mm_chr3_45774008_45775073
Length = 1066
Score = 1205 bits (623), Expect = 0.0
Identities = 644/653 (98%), Gaps = 4/653 (0%)
Strand = Plus / Minus
Query: 1 aaccaaatagcttaactgtcgttgtttccacaagtgactgcaatttacaggcagctaaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 aaccaaatagcttaactgtcgttgtttccacaagtgactgcaatttacaggcagctaaag 590
Query: 61 caaatagaaagagtcactcttttattccagcaatttttagccacttctatatttgcaaga 120
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 589 caaatagaaagagtcactctttttttccagcaatttttagccacttctatatttgcaaga 530
Query: 121 aggggagggctatgaatctttttagtctgattttaagtccacaaaggaatgttagttaaa 180
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 529 aggggagggctatgaatctttttagtctgattttaggtccacaaaggaatgttagttaaa 470
Query: 181 ctaagcttaagtgagtctcagacagatactctccactgctctagttttctaagagcatca 240
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 469 ctaagcttaagtgagtctcagacagatactctccactgctctagttttcaaagagcatca 410
Query: 241 tccatatctaaagaatagagtttagcaacacaacctttgctaaaattctatatgaaccct 300
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 tccatacctaaagaatagagtttagcaacacaacctttgctaaaattctatatgaaccct 350
Query: 301 atatcgaaatatttgctgatgtttatatttatttttaaagaagatttcacctttgcacat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 atatcgaaatatttgctgatgtttatatttatttttaaagaagatttcacctttgcacat 290
Query: 361 ggatttttcatcctctaaatgagtctctttttatgattggttcatagggctctgaatact 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 ggatttttcatcctctaaatgagtctctttttatgattggttcatagggctctgaatact 230
Query: 421 gaacatatagataagcaaataaagtgaattttatttatttatttatttatttatttattt 480
|||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct: 229 gaacatatagataagcaaatgaagtgaat----tttatttatttatttatttatttattt 174
Query: 481 atttatttattattaactaaactgaaatataaccaggacactattgcataacagtcgaga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 atttatttattattaactaaactgaaatataaccaggacactattgcataacagtcgaga 114
Query: 541 gctaattaagaagcacatttttaggcatagttttcattttatatagaaatattacacaaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113 gctaattaagaagcacatttttaggcatagttttcattttatatagaaatattacacaaa 54
Query: 601 tttaaacaacacagtccaatcattgcacaaggcctcttgatgcaaacattaga 653
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53 tttaaacaacacagtccaatcattgcacaaggcctcttgatgcaaacattaga 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 56
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1066
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1056
Effective search space: 692736
Effective search space used: 692736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no505_l12.g1 MSMg01no505_l12.g1 CHROMAT_FILE:
MSMg01no505_l12.g1 PHD_FILE: MSMg01no505_l12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:33:42 2005
(312 letters)
>mm_chr3_45620684_45621395
Length = 712
Score = 458 bits (237), Expect = e-133
Identities = 290/315 (92%), Gaps = 14/315 (4%)
Strand = Plus / Plus
Query: 1 ttatacattttatattatgtattattatcttataccatataaaatgtatcatattttaca 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 205 ttatacattttatattatgtattattatcttataccatataatatgtatcatattttaca 264
Query: 61 tattatataatatgccatatgtttatggtatattatacatc-----atattatatatcat 115
||||||||| | || |||||||||||| ||||||||||||| ||||||||||| ||
Sbjct: 265 tattatatactttgtcatatgtttatgatatattatacatcatattatattatatataat 324
Query: 116 atattgcattttatatattatatattttatactatatatggtaaaatgttcacatatatg 175
|||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 325 atattgtatttcatatattatatattttatactatatatggtaaaacgttcacatatatg 384
Query: 176 tatatatatatatatacatagatttctagttttttttttttaataccagtcattccatat 235
||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct: 385 ------tatatatatacatagatttctag---tttttttttaataccagtcattccatgt 435
Query: 236 aatcctctatgtaagatctctgaaagcaccaggacctgcagagtaataattcatatggca 295
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 aatcctctatgtaaggtctctgaaagcaccaggacctgcagagtaataattcatatggca 495
Query: 296 caagatgaaaccctg 310
|||||||||||||||
Sbjct: 496 caagatgaaaccctg 510
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 712
Length adjustment: 9
Effective length of query: 303
Effective length of database: 703
Effective search space: 213009
Effective search space used: 213009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
