Query= MSMg01no505_o21.b1 MSMg01no505_o21.b1 CHROMAT_FILE:
MSMg01no505_o21.b1 PHD_FILE: MSMg01no505_o21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:33:57 2005
(660 letters)
>mm_chr3_79332773_79333832
Length = 1060
Score = 953 bits (493), Expect = 0.0
Identities = 586/659 (88%), Gaps = 66/659 (10%)
Strand = Plus / Plus
Query: 4 ggaattctatgatttacgatgcactttctgcactgggctgctgcagtactggcagtcccg 63
|||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctatgaactaggatgcactttctgcactgggctgctgcagtactggcagtcccg 263
Query: 64 ggcccagtgctacctatgtatcccacatgactgttgtactcattgggtctttcctttttc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ggcccagtgctacctatgtatcccacatgactgttgtactcattgggtctttcctttttc 323
Query: 124 acataatggaaaagcatgaaggagacaaaagcaagtaaataaaaggcctcagctcatcaa 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 324 acataatggaaaagcatgaaggagacaaaagcaagtaaataaaaggcctcagctcattaa 383
Query: 184 tatgctcaactaagacctgaaacaaacaacgtaaggtgtgtaagtgcagaaagtgaactg 243
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 384 tatgctcaactaagacctgaaacaaacaatgtaaggtgtgtaagtgcagaaagtgaactg 443
Query: 244 tacatttctctgactgccacacgacttcagcaaacagtgagcaatctagggccagatccc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tacatttctctgactgccacacgacttcagcaaacagtgagcaatctagggccagatccc 503
Query: 304 aacggtgcaagctcttgtcaataatgtaaaactaccactggggttagtcaagactccaaa 363
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 504 aacggtgcaagctcttgtcaataatgtaaaactaccactggggttagtcaagactctaaa 563
Query: 364 atgaattctgcaagccagaaaaatacagtaagtaacaaatatatgcagatagatagatag 423
||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 564 atgaattctgcaagccagaaaaatacagtaagtaacaaatatatgca--ta--------- 612
Query: 424 atagatagatagatagatagatagatagatagatagatagatagatagatagatagatag 483
|||||||
Sbjct: 613 -----------------------------------------------------tagatag 619
Query: 484 atagataaacacagagatagatttccttttatttatgtctgtgtggcacacacacacaca 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 atagataaacacagagatagatttccttttatttatgtctgtgtggcacacacacacaca 679
Query: 544 cacac--tccatagcatcatctggaggtcagaagacactttgtggggagtctgtgctctc 601
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 cacacactccatagcatcatctggaggtcagaagacactttgtggggagtctgtgctctc 739
Query: 602 cttccactatgagagctatagactgaactcaggctgtgaagattcacagcaagcacctt 660
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 cttctactatgagagctatagactgaactcaggctgtgaagattcacagcaagcacctt 798
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1060
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1050
Effective search space: 682500
Effective search space used: 682500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no505_o21.g1 MSMg01no505_o21.g1 CHROMAT_FILE:
MSMg01no505_o21.g1 PHD_FILE: MSMg01no505_o21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:33:57 2005
(574 letters)
>mm_chr3_79430048_79431021
Length = 974
Score = 1042 bits (539), Expect = 0.0
Identities = 563/571 (98%)
Strand = Plus / Minus
Query: 1 actctgtagaccaggctggcctcgaactcagaaatacgcctgcctctgcctcccaagtgc 60
|||||||||||||| |||||| ||||||||||||| |||||||| |||||||||||||||
Sbjct: 571 actctgtagaccagactggccgcgaactcagaaatccgcctgcccctgcctcccaagtgc 512
Query: 61 tgggattaaaggcatgcgccaccacacccggccttcttttttctatttaattaagaaaaa 120
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 511 tgggattaaaggcatgcgccaccacacccggccttcttctttctatttaattaagaaaaa 452
Query: 121 acttaccatggcctcaggttccatgatttcagagataatttcagatcaattactgttctc 180
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 atttaccatggcctcaggttccatgatttcagagataatttcagatcaattactgttctc 392
Query: 181 agaatttgacaagtattagaagaaactatctgaattcctatttgtctgatgtaaataggg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 agaatttgacaagtattagaagaaactatctgaattcctatttgtctgatgtaaataggg 332
Query: 241 cttattgttatttcacatctcagaaagttatgagggatattttgtttggaacaggttctc 300
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 cttatcgttatttcacatctcagaaagttatgagggatattttgtttggaacaggttctc 272
Query: 301 atatagcacaggttggctataatctgattgtcgtgtggctggagataaccttgaatttct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 atatagcacaggttggctataatctgattgtcgtgtggctggagataaccttgaatttct 212
Query: 361 gatctccccactgtgcattaccacatggcttatgatgtactggggatccaactaggcaag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 gatctccccactgtgcattaccacatggcttatgatgtactggggatccaactaggcaag 152
Query: 421 cactctaccaactgagccacaccccatccaagacatagtattaaaatggaaaattcttaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 cactctaccaactgagccacaccccatccaagacatagtattaaaatggaaaattcttaa 92
Query: 481 ccattcatcctgtccaggaaagtgtaaattatatagtcaaaatgaaattccttgtcttta 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91 ccattcatcctgtccaggaaagtgtaaattatatagtcaaaatgaaattccttgtcttta 32
Query: 541 ctactttttacagtccatttataaaagtttc 571
||||||||||||||||||||| |||||||||
Sbjct: 31 ctactttttacagtccatttacaaaagtttc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 974
Length adjustment: 10
Effective length of query: 564
Effective length of database: 964
Effective search space: 543696
Effective search space used: 543696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
