Query= MSMg01no506_k17.b1 MSMg01no506_k17.b1 CHROMAT_FILE:
MSMg01no506_k17.b1 PHD_FILE: MSMg01no506_k17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:57 2005
(229 letters)
>mm_chr3_83702622_83703249
Length = 628
Score = 325 bits (168), Expect = 1e-93
Identities = 210/244 (86%), Gaps = 32/244 (13%)
Strand = Plus / Minus
Query: 1 acaggcaggaagtctgtgtcacaggccttcagtggcctcagcggccttcagtggggttag 60
|||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct: 337 acaggcaggaagtctgtgtcac-ggccttcagtggcctccgcggccttcagtggggttag 279
Query: 61 aggtgaaagaggggctctgcagctgtctgtagtgcccacactgtctctcctcac------ 114
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 aggtgaaagaggggctctgcagctgtctgtagtgcccacactgtctctcctcacacccac 219
Query: 115 -------------------------acccacaccacacaacactgtctccccttgtgccc 149
|||||||||||||||||||||||||||||||||||
Sbjct: 218 actacacaacattgtctctcctcagacccacaccacacaacactgtctccccttgtgccc 159
Query: 150 acactacacatttcttcacgggagacatttgactgaaccctttagattgcaaatagactt 209
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 acaccacacatttcttcacgggagacatttgactgaaccctttagattgcaaatagactt 99
Query: 210 aaca 213
||||
Sbjct: 98 aaca 95
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 229
Length of database: 628
Length adjustment: 9
Effective length of query: 220
Effective length of database: 619
Effective search space: 136180
Effective search space used: 136180
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no506_k17.g1 MSMg01no506_k17.g1 CHROMAT_FILE:
MSMg01no506_k17.g1 PHD_FILE: MSMg01no506_k17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:57 2005
(586 letters)
>mm_chr3_83524147_83525132
Length = 986
Score = 826 bits (427), Expect = 0.0
Identities = 575/699 (82%), Gaps = 113/699 (16%)
Strand = Plus / Plus
Query: 1 cattcccacacacgcagcttcaaccgctgtcctgacatcaattcagaaatcttcaggcac 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88 cattcccacacacgcagcttcaaccgctgtcctgacatcaattcagaaatcttcaggcat 147
Query: 61 aagtctggcattagcgactcagggatggtggaagtcttcagggtgaaggcagaaacctag 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148 gagtctggcattagcgactcagggatggtggaagtcttcagggtgaaggcagaaacctag 207
Query: 121 gtgctgtgtcacaaa--------------------------------------------- 135
|||||||||||||||
Sbjct: 208 gtgctgtgtcacaaacgtaagtcagtggagcagaaagactgcaggtgggttccctgggga 267
Query: 135 ------------------------------------------------------------ 135
Sbjct: 268 tcataaaggagacagggacacaccttcacataaagcgggctcttgaaagagacagggaac 327
Query: 136 --------tggttccattataagattgaatgagaaaaaactcctgcgggcatggtttaat 187
|||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct: 328 aaaccctatggttccattataagattgaatgagaaaaaactcctgcaggcatgatttaat 387
Query: 188 ctggaccggaacaattcagaaatagccatgcgggaggatggagaagtggatctggacatt 247
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 388 ctggaccggaacaattcagaaatagccatgcgggaggatggagaagtggatctggacact 447
Query: 248 gtttactgtggtgggctgaataagaatgggccccacagacttacgcatgtgaatcctttg 307
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 ggtgactgtggtgggctgaataagaatgggccccacagacttacgcatgtgaatcctttg 507
Query: 308 tccccagttggtggaattatttgggaaggattaggaggtgtggacttgttggaggagtct 367
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 508 tccccagttggtggaattatttgggaaggattaggaggtgtggacttcttggaggagtct 567
Query: 368 ccagtgccagtcttgcctgccagcctgctgccatgctccctgaagtgatagtcatgaact 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 ccagtgccagtcttgcctgccagcctgctgccatgctccctgaagtgatagtcatgaact 627
Query: 428 ctaactaaccctctgtaagtaagctttttcttctataagttgtgttggtcacggtgtctc 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 ctaactaaccctctgtaagtaagctttttcttctataagttgtgttggtcacggtgtctc 687
Query: 488 ttcacagcaattaaaaggtaactgggacagtgaccaaatcaataaggacaactcaacatc 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 ttcacagcaattaaaaggtaactgggacagtgaccaaatcaataaggacaactcaacatc 747
Query: 548 gaaaacagaagcaggagtgaggcccagtgcgtggaaggt 586
|||||| ||||| || |||||||||||||||||||||||
Sbjct: 748 gaaaacggaagccggtgtgaggcccagtgcgtggaaggt 786
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 986
Length adjustment: 10
Effective length of query: 576
Effective length of database: 976
Effective search space: 562176
Effective search space used: 562176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
