Query= MSMg01no506_l08.b1 MSMg01no506_l08.b1 CHROMAT_FILE:
MSMg01no506_l08.b1 PHD_FILE: MSMg01no506_l08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:00 2005
(702 letters)
>mm_chr3_132945020_132946121
Length = 1102
Score = 1255 bits (649), Expect = 0.0
Identities = 679/699 (97%), Gaps = 16/699 (2%)
Strand = Plus / Minus
Query: 4 ggaattcactttgtattccaggttagtctcaaactcacagagatcagcctgcctctgcct 63
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1093 ggaattcactttgtagaccaggttagtctcaaactcacagagatcagcctgcctctgcct 1034
Query: 64 cccaagtgctgggattaaagtgtgcactacctttaacaccccttcccctgcacacacccc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1033 cccaagtgctgggattaaagtgtgcactacctttaacaccccttcccctgcacacacccc 974
Query: 124 cattcacatgctgactttccccataacatgtgctccacagatgcgtctactggaggaacc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 973 cattcacatgctgactttccccataacatgtgctccacagatgcgtctactggaggaacc 914
Query: 184 aaagctgacagcagctcaagaattttgcctggatctggtgctccacagctataagagcac 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 913 aaagctgacagcagctcaagaattttgcctggatctggtgctccacagctataagagcac 854
Query: 244 ttgggaaatgcaatcatgagggttaggagttcaaggtcatccttgggaatggggaatttg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 853 ttgggaaatgcaatcatgagggttaggagttcaaggtcatccttgggaatggggaatttg 794
Query: 304 aaggtagcctgaactacatgagacactgtctcaaaaaagggaaaagaaaaacaagcaaac 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 aaggtagcctgaactacatgagacactgtctcaaaaaagggaaaagaaaaacaagcaaac 734
Query: 364 tgcgggacttactcatatttttaggagcagaatagagcaaggatgtcatttctctctttt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 tgcgggacttactcatatttttaggagcagaatagagcaaggatgtcatttctctctttt 674
Query: 424 ttcttcaaattttcataggtggcatgctaagcagaaaaaggaaatagaaaattatagaca 483
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 ttcttcaaattttgataggtggcatgctaagcagaaaaaggaaatagaaaattatagaca 614
Query: 484 tggaaagtttttaaaaaatgttattacagacaaattgactgtaaacataaggtcctaaag 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 tggaaagtttttaaaaaatgttattacagacaaattgactgtaaacataaggtcctaaag 554
Query: 544 aatctcaaataaataaataaataaataaataaataaataaataaataaataaataaatct 603
|||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 553 aatctc----------------aaataaataaataaataaataaataaataaataaatct 510
Query: 604 cactttaataaggtacctaaatcaaaattggtgtacaaaataaattacatttctatattg 663
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 509 cactttaataaggtacctaaatcaaaattggtgtacaaaatcaattacatttctatattg 450
Query: 664 acaacaaaacattgaaaaatatgtatttcaattacaaaa 702
|||||||||||||||||||||||||||||||||||||||
Sbjct: 449 acaacaaaacattgaaaaatatgtatttcaattacaaaa 411
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 702
Length of database: 1102
Length adjustment: 10
Effective length of query: 692
Effective length of database: 1092
Effective search space: 755664
Effective search space used: 755664
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no506_l08.g1 MSMg01no506_l08.g1 CHROMAT_FILE:
MSMg01no506_l08.g1 PHD_FILE: MSMg01no506_l08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:00 2005
(653 letters)
>mm_chr3_132807695_132808747
Length = 1053
Score = 1226 bits (634), Expect = 0.0
Identities = 649/654 (99%), Gaps = 2/654 (0%)
Strand = Plus / Plus
Query: 1 aatacctacgtgatggattgaatagaatcttcctcctgggtaatagctttacaccctagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatacctacgtgatggattgaatagaatcttcctcctgggtaatagctttacaccctagc 260
Query: 61 tccactaatatttcacctgagctgctgacaagtacaaaattgattgatttgagatttatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tccactaatatttcacctgagctgctgacaagtacaaaattgattgatttgagatttatc 320
Query: 121 tttcctccagtccagcctatgcagctgattttctgattaacagggaaatgcttcattgct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttcctccagtccagcctatgcagctgattttctgattaacagggaaatgcttcattgct 380
Query: 181 gacaggccatcctctataaagattaagaggaaaaatctaattaatattccttcaggctat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gacaggccatcctctataaagattaagaggaaaaatctaattaatattccttcaggctat 440
Query: 241 tttagctacaattcacttttagttcacggttt-aaaaaaaataaaaagctgatgataaat 299
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 441 tttagctacaattcacttttagttcacggtttaaaaaaaaataaaaagctgat-ataaat 499
Query: 300 atgggaaagaatataatggctcccacaaaagtctgccccagattagaagctgtctgctct 359
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 500 atgggaaagaatataatggcccccacaaaagtctgccccagattagaagctgtctgctct 559
Query: 360 attcgacaggactgtcttgagcaagaagcagaattgcaaagcccggaagagaatttctgc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 attcgacaggactgtcttgagcaagaagcagaattgcaaagcccggaagagaatttctgc 619
Query: 420 accacatttatagatgcctacaggggggttactgtctccttaaactcacttccaatttga 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 accacatttatagatgcctacaggggggttactgtctccttaaactcacttccaatttga 679
Query: 480 ttttattatggttgtctttagattagctatcccaattacccatctcatgatcagttatca 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ttttattatggttgtctttagattagctatcccaattacccatctcatgatcagttatca 739
Query: 540 ctaatgtcctaaactttcctcgttatacctccacatcaagcctcttttgggaatggacct 599
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 740 ctaatgtcctaaactttcctcgttatacctccacatcaaacctcttttggggatggacct 799
Query: 600 ggtgaatccctagaaagttataaagaaatagaaacaatgatggcactgactatg 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 ggtgaatccctagaaagttataaagaaatagaaacaatgatggcactgactatg 853
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space: 670649
Effective search space used: 670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
