BAC Information

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BAC

Clone NameMSMg01-507B23
Chromosome3 (Build37)
Map Location 139,353,368 - 139,353,600
singlet/doubletsinglet
Overlap geneB930007M17Rik
Upstream geneTspan5, LOC620771, Rap1gds1, EG229879, LOC100039840
Downstream geneLOC229883
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-507B23.T7 (MSMg01no507_b23.b1)MSMg01-507B23.TJ (MSMg01no507_b23.g1)
ACCAG581349AG581350
length735767
length of high quality
(start - end)
255 (21 - 275)550 (80 - 629)
definitionCHROMAT_FILE: MSMg01no507_b23.b1 PHD_FILE: MSMg01no507_b23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:35:33 2005CHROMAT_FILE: MSMg01no507_b23.g1 PHD_FILE: MSMg01no507_b23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:35:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GACTCACTATAGTTCGAGGATCCGCGGAATTCATTAGTCATTTTTTGCAT
TGTGCATGTATTCTGTCATCAATGCTATAAAACAGCCACTACAACAAATA
ATAATAAATAAAGCAGCCACTACAACAAAACTGTAAAAAAAGTCATAGTA
CAGTAATTGGGAAATAATTGAATACTAATGAGCACAGCTGATAGGCATTA
GCTCTAGCATGACTGGACTATCTACAGGTAAAGCCTGTGTAAACTCACTG
AAGGGTTAGCACCATGCAGGGATTCTAATGGCCNTGGTGCTGCACATTGG
ATATGGCTTCTACTTCCCAGGAAGATTTTAAGTGTATGGCTTGGTTTAAG
TCAGAGATATGCATAACANGTTTTTATTNCGCACTTAGTTAAATGGATAN
TAGATTTTAAGGAGTCCTTTNAAACNATAGGATGNTGTGTAGGTNAAATC
TAAAANTATTTTGGTGGACATTNNTGTNTTTGTGTTNTGATTTTTGGTTC
CCTCNNNCTNTCNATTGGNTGNCCCGGGGAGNACNAGTTATCCCCCCNAA
TNNACGNNCAAACAAGTNACNNAACAACGNAGNACACCGATTGGGNAGNT
GTANNTGAGGNATANATAAAATGNTGNGGGGNAANNNNNNNNNTGAACNN
NNNCCNAAGCGGTCGTTTTNNNNTATGAGTTTNNNNNTGTGATGGAGATC
AGTCGGGNTCGNNNACTTNNAGGNNNTANNNNAAN
NNNNNCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATACAGTTGAATCCTTCTTAA
CAGTCTGCTTTACGGGAACCTTTATTACCGCGACCCGCAGTTCTGGTTCT
GGAATGAGGGATCTTCCTTGCGCCAGTCCCGAGTTTTTTCTCGTCCCGGG
TTTCGGCACCAATTCTTAATAGCGTTCTCACGCCCGGCCAGGAAAGACGC
AACAAACCAGAATCTTCTGCGGCAAAACTTTATTGCTTACATCTTTTGGA
GCCAGGAGGGCAAGCGCCCAGCGCCCAGCCCCAAAAACGAAAGCCCCTCA
ATAATGAAACCGAAACCCCTTCCCTATTTAGGAGAGTTATCCTTCACTTA
GGACGCATCACTCCCTGATTGGCTGCAGCCCATGGCCGAGCTGACGTCAC
GGGGAAGGCAGAGCACATGGAGTGGAGAACCACCCTCGGCACATGCGCAG
ATTATTTGTTTACCACTTAGAACACAGCTGTCAGCGCCATCTTGTAACGG
CGAATGTGGGCGCGGCTCCCAACATCCATCACCTGTTTGGCTGTGTTTTC
CTGCTTTTCTTTAAGAGCCTGTAACTCTTTAGCAGTGCTCTCCTGTAAAT
CTTTAAGTGACTTATGAAAGTCCTTCTTGATGTCCTCTATCATCATCATG
AGAAATGTTTTTAAATCTGGGTCTAGATTTTCGGTTGTGTTGGGTGCCCA
GGACTANGTGGGGTGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no507_b23.b1 MSMg01no507_b23.b1 CHROMAT_FILE:
MSMg01no507_b23.b1 PHD_FILE: MSMg01no507_b23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:33 2005
         (255 letters)



>mm_chr3_139353145_139353800
          Length = 656

 Score =  377 bits (195), Expect = e-109
 Identities = 229/251 (91%), Gaps = 19/251 (7%)
 Strand = Plus / Plus

                                                                       
Query: 6   ggaattcattagtcattttttgcattgtgcatgtattctgtcatcaatgctataaaacag 65
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 224 ggaattcattagtcagtttttgcattgtgcatgtattctgtcatcaatgctataaaaca- 282

                                                                       
Query: 66  ccactacaacaaataataataaataaagcagccactacaacaaaactgtaaaaaaa-gtc 124
                    ||||        ||||||||||||||||||||||||||||||||||| |||
Sbjct: 283 ---------caaa--------aataaagcagccactacaacaaaactgtaaaaaaaagtc 325

                                                                       
Query: 125 atagtacagtaattgggaaataattgaatactaatgagcacagctgataggcattagctc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 atagtacagtaattgggaaataattgaatactaatgagcacagctgataggcattagctc 385

                                                                       
Query: 185 tagcatgactggactatctacaggtaaagcctgtgtaaactcactgaagggttagcacca 244
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tagcatgactggactgtctacaggtaaagcctgtgtaaactcactgaagggttagcacca 445

                      
Query: 245 tgcagggattc 255
            ||||||||||
Sbjct: 446 ggcagggattc 456


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 255
Length of database: 656
Length adjustment: 9
Effective length of query: 246
Effective length of database: 647
Effective search space:   159162
Effective search space used:   159162
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)