Query= MSMg01no507_c14.b1 MSMg01no507_c14.b1 CHROMAT_FILE:
MSMg01no507_c14.b1 PHD_FILE: MSMg01no507_c14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:36 2005
(675 letters)
>mm_chr3_53614601_53615675
Length = 1075
Score = 1255 bits (649), Expect = 0.0
Identities = 658/663 (99%), Gaps = 4/663 (0%)
Strand = Plus / Minus
Query: 13 tgcattgaccatcgatgtgtttatttgactttcataccaaatatttttaaaagccttgga 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1075 tgcattgaccatcgatgtgtttatttgactttcataccaaatatttttaaaagccttgga 1016
Query: 73 aatttcaggcttgaaaataatacttgatctttaataatatccctttccccctttgaattt 132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1015 aatttcaggcttgaaaataatacttgatctttaataatatccctttccccctttgaattt 956
Query: 133 caaatagatgaatcacaaaggatttgcagccaattccccacaaagtgttcttaacagctt 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 955 caaatagatgaatcacaaaggatttgcagccaattccccacaaagtgttcttaacagctt 896
Query: 193 tattgagatgtcatccatacaccatccaatttacacatttaaagtatacagtttgctggt 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 895 tattgagatgtcatccatacaccatccaatttacacatttaaagtatacagtttgctggt 836
Query: 253 ttctagcatattcacacaattctacagccaccaccacagttgattttagaacacttttgt 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835 ttctagcatattcacacaattctacagccaccaccacagttgattttagaacacttttgt 776
Query: 313 cacttccttcaaacaaacaaacaaacaaacaaacaaacaaacaaacaagaagaagctcaa 372
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 cacttcctt----caaacaaacaaacaaacaaacaaacaaacaaacaagaagaagctcaa 720
Query: 373 ctcaaagatgcccttcacacttggcctcaaacctccagccatctgcagctgttcctgtat 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 ctcaaagatgcccttcacacttggcctcaaacctccagccatctgcagctgttcctgtat 660
Query: 433 gtccctacagatcttcccctgaccttttcctatagatcacacagtccaaacagcatgggc 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 gtccctacagatcttcccctgaccttttcctatagatcacacagtccaaacagcatgggc 600
Query: 493 tcttttctggataactttttttccttagctgatacattatctcatgtgtattatgtagga 552
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 tcttttctggattactttttttccttagctgatacattatctcatgtgtattatgtagga 540
Query: 553 gaaggaccgttgggttgtgagatagctctacggaactctttaattatgccagattgtttt 612
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 gaaggaccgttgggttgtgagatagctctacggaactctttaattatgccagattgtttt 480
Query: 613 ccaatatggctaacacattctggatccacaggagtaatttatcaggggtctagtttactc 672
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 ccaatatggctaacacattctggatccacaggagtaatttatcaggggtctagtttactc 420
Query: 673 aag 675
|||
Sbjct: 419 aag 417
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1075
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1065
Effective search space: 708225
Effective search space used: 708225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no507_c14.g1 MSMg01no507_c14.g1 CHROMAT_FILE:
MSMg01no507_c14.g1 PHD_FILE: MSMg01no507_c14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:36 2005
(562 letters)
>mm_chr3_53500048_53501008
Length = 961
Score = 1048 bits (542), Expect = 0.0
Identities = 557/562 (99%), Gaps = 1/562 (0%)
Strand = Plus / Plus
Query: 1 agatgacctcaaacaattgaggcaggttcatttcatgccggagaggcgacatctctagtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agatgacctcaaacaattgaggcaggttcatttcatgccggagaggcgacatctctagtc 260
Query: 61 tggccactgatcagggacaggacccaatagcttgacgaacacagttcgtggaagtctgtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggccactgatcagggacaggacccaatagcttgacgaacacagttcgtggaagtctgtg 320
Query: 121 gcttttcgtagcccaggattgagatgggaatccttaggggccgaatgaggaagtgagctg 180
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcttttcatagcccaggattgagatgggaatccttaggggccgaatgaggaagtgagctg 380
Query: 181 ctttccttagaccagcattggctgcctttttctgagaccagtcagtgtctgggatccagg 240
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 381 ctttccttagaccagcattggctgcctttttccgagaccagtcagtgtctgggatccagg 440
Query: 241 cagctgcttttttctgcaagccctggagagctggcttcctgggactttgagctgggtttc 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 441 cagctgcttttttctgcaagccctggagagctggcttcctgggactttgagctgggtt-c 499
Query: 301 agggccttggctttggcaagatggggatgggtgggattttctttttcagccatagtggag 360
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 500 agggccttggctttggcaagatgggggtgggtgggattttctttttcagccatagtggag 559
Query: 361 gactggaggcttctgagggatgaagacggagtcagtgatggatagcattgattatctact 420
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 560 gactggaggcttctgagggatgaagacggagtcagtgatggatagcactgattatctact 619
Query: 421 tgttaggatctcaaatcatctaggaagagagacctctgagtatgactgtgaagaagctcc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tgttaggatctcaaatcatctaggaagagagacctctgagtatgactgtgaagaagctcc 679
Query: 481 tagagcggactccttggggtgggaaggtccactcggactgtgagcagggccatttgtttg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tagagcggactccttggggtgggaaggtccactcggactgtgagcagggccatttgtttg 739
Query: 541 ctggggtcactgactgaattag 562
||||||||||||||||||||||
Sbjct: 740 ctggggtcactgactgaattag 761
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 961
Length adjustment: 10
Effective length of query: 552
Effective length of database: 951
Effective search space: 524952
Effective search space used: 524952
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
