BAC Information

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BAC

Clone NameMSMg01-507E06
Chromosome3 (Build37)
Map Location 108,270,648 - 108,452,461
singlet/doubletdoublet
Overlap gene5330417C22Rik, 1700013F07Rik, 2010200O16Rik, Taf13, Wdr47, LOC100043166
Upstream geneSlc6a17, Ubl4b, Alx3, 6330569M22Rik, Ahcyl1, Csf1, LOC280047, Eps8l3, Gstm5, LOC671031, Gstm7, Gstm6, LOC668674, Gstm3, LOC624701, Gstm2, Gstm1, LOC100043641, Gstm4, Ampd2, Gnat2, Gnai3, Gpr61, LOC100043654, Amigo1, Cyb561d1, Atxn7l2, Sypl2, LOC668686, Psma5, Sort1, Mybphl, Psrc1, Celsr2, Sars
Downstream geneClcc1, Gpsm2, 4921525H12Rik, Stxbp3a, Fndc7, Prpf38b, 4921515J06Rik, B430201A12Rik, 4930443G12Rik, Slc25a24, Vav3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-507E06.T7 (MSMg01no507_e06.b1)MSMg01-507E06.TJ (MSMg01no507_e06.g1)
ACCAG581458AG581459
length786777
length of high quality
(start - end)		656 (44 - 699)613 (71 - 683)
definitionCHROMAT_FILE: MSMg01no507_e06.b1 PHD_FILE: MSMg01no507_e06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:35:45 2005CHROMAT_FILE: MSMg01no507_e06.g1 PHD_FILE: MSMg01no507_e06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:35:45 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,270,648 - 108,271,299)(108,451,850 - 108,452,461)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCACTTAGAATTCGGCACCTTGTTATTCTTGGTCCCTGGACCACAGGG
CACACAGGCCTGTGCACCGTAAGGCTGGTGAGCTTTCAGGATGGTGTTAG
AGGGACAGAGGTGGCAGGTCCCAGAATCCCGGTTGATGTAATGGCCAGCA
GGACAAGAGGTGCAGGAGGAGCCCAAATCAGAGGCTTCTAGGGCACAGGG
ACGGCAGTAGGAGGCCACGCCCCCCATGACGTTGGTGACATTGATTGAGT
AGATCTTGGCGACATCATTAGTATACTTCCTGCCCTGGAGATGAGGGAAC
AAAAGCAGAGAAAGGAGAGGCCTGAAGCAGCAGCAGCCATAGGAAGAGCA
GAGTTTATTTTCACTTTACTTGTGCATGTACACGTGTGTACGTGTGTACA
TGTGTATATGTGTATGTGAATGTACATGCACATATGTAAGTATGCATGTA
GAAGCCAGATGTGGATATCAGACGTTCCTTTCATCACTCTCCATCTCATT
TTTTGAGACAGGGTCTCTCACTGAACTAACTGTCTCATGTCCTGGCTTTT
ACATGGATGCTAGAGATCAAACCCAGGTCCTCGGGCTCCATGGCAACAGC
TGGTACTGACTGAACCACTAGAAACATCTTTCTCACTTTATTTCATGGTG
GCTCTTTGTATGAAAATTAAAGATGAACGATACTAAAAATAGAGAGCTAG
GGGGTGGTGGTGTGCACCTTTAATCCCAGCCCTTGG

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTTCCGAATTAAATCCTTTCTACCCAGGGATTTTGGTTGG
TTGGTTTTGAATGTTGTTACATTTTAGTAATATTCTGTCTCTCTGTGTGT
TTAGGACAGGAGGGACATACCCCAGAAAGGCCTGAGATTTACTATGTAAC
CCAAGCTGGCCTTAAACTTGTGGCAATTCTCCTGCCTCAGCCTCCCAACT
GCCTTGTCCAAATAATTTTATATTCTTATTCTTTTGGTTGTGAGCCTAGC
CTTTAATAGTGGAGCCATCTGATTAGCGACAATTACATAGTCTTAAAGAT
TTGTGAATTCTTTCTCACATTTCATGGGCTTCCTTCACTGTTTAGTGTAT
CTTTTGGGCTTATAGTTTTTGAGGAGAACGAAATATCTTTGATTGAAAAA
AGAAAAACAAAAAGAAGGGGGAAATTTTAATTAGGCTGTGAAATTTAAAT
TAGACCTGGGGAGTCCGACACCTCCTTTGGGACAAACTCCTTTCTCACAT
GCTGAGAGCAGCTAGAAGCACAGACACCTTGGCCTTGGCAGTTCCTTTTG
TGTATAAAGTTCAGAATCTGTTCAACCCGTGGGGGAAGACAGTGTAGAGA
GACAAAAAGTGAGCGCATGTACCTGAATAGTTGCTAAAATCATTTCTGGT
GCTATAAGACAATGCAATAAAAGAAATGAAATGGAAGCCAGTGAGTGGCT
CCAGAGTAAAGTGCCTTGGCCCAACAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no507_e06.b1 MSMg01no507_e06.b1 CHROMAT_FILE:
MSMg01no507_e06.b1 PHD_FILE: MSMg01no507_e06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:45 2005
         (656 letters)



>mm_chr3_108270444_108271499
          Length = 1056

 Score = 1230 bits (636), Expect = 0.0
 Identities = 648/652 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccacttagaattcggcaccttgttattcttggtccctggaccacagggcacacag 64
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccacttagaacccggcaccttgttattcttggtccctggaccacagggcacacag 264

                                                                       
Query: 65  gcctgtgcaccgtaaggctggtgagctttcaggatggtgttagagggacagaggtggcag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gcctgtgcaccgtaaggctggtgagctttcaggatggtgttagagggacagaggtggcag 324

                                                                       
Query: 125 gtcccagaatcccggttgatgtaatggccagcaggacaagaggtgcaggaggagcccaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtcccagaatcccggttgatgtaatggccagcaggacaagaggtgcaggaggagcccaaa 384

                                                                       
Query: 185 tcagaggcttctagggcacagggacggcagtaggaggccacgccccccatgacgttggtg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcagaggcttctagggcacagggacggcagtaggaggccacgccccccatgacgttggtg 444

                                                                       
Query: 245 acattgattgagtagatcttggcgacatcattagtatacttcctgccctggagatgaggg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 acattgattgagtagatcttggcgacatcattagtatacttcctgccctggagatgaggg 504

                                                                       
Query: 305 aacaaaagcagagaaaggagaggcctgaagcagcagcagccataggaagagcagagttta 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aacaaaagcagagaaaggagaggcctgaagcagcagcagccataggaagagcagagttta 564

                                                                       
Query: 365 ttttcactttacttgtgcatgtacacgtgtgtacgtgtgtacatgtgtatatgtgtatgt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttttcactttacttgtgcatgtacacgtgtgtacgtgtgtacatgtgtatatgtgtatgt 624

                                                                       
Query: 425 gaatgtacatgcacatatgtaagtatgcatgtagaagccagatgtggatatcagacgttc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gaatgtacatgcacatatgtaagtatgcatgtagaagccagatgtggatatcagacgttc 684

                                                                       
Query: 485 ctttcatcactctccatctcattttttgagacagggtctctcactgaactaactgtctca 544
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 685 ctttcatcactctccatctcattttttgagacagggtctctcactgaactaattgtctca 744

                                                                       
Query: 545 tgtcctggcttttacatggatgctagagatcaaacccaggtcctcgggctccatggcaac 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tgtcctggcttttacatggatgctagagatcaaacccaggtcctcgggctccatggcaac 804

                                                               
Query: 605 agctggtactgactgaaccactagaaacatctttctcactttatttcatggt 656
           |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 805 agctggtactgactgaaccactagaagcatctttctcactttatttcatggt 856


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1056
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1046
Effective search space:   675716
Effective search space used:   675716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no507_e06.g1 MSMg01no507_e06.g1 CHROMAT_FILE:
MSMg01no507_e06.g1 PHD_FILE: MSMg01no507_e06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:45 2005
         (613 letters)



>mm_chr3_108451468_108452479
          Length = 1012

 Score = 1110 bits (574), Expect = 0.0
 Identities = 604/614 (98%), Gaps = 3/614 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaatcctttctacccagggattttggttggttggttttgaatgttgttacattttagtaa 60
           |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 994 aaatcctttctaaccagggatttt-gttggttggttttgaatgttgttacattttagtaa 936

                                                                       
Query: 61  tattctgtctctc-tgtgtgtttaggacaggagggacataccccagaaaggcctgagatt 119
           ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 935 tattctgtctctcttgtgtgtttaggacaggagggacatgccccagaaaggcctgagatt 876

                                                                       
Query: 120 tactatgtaacccaagctggccttaaacttgtggcaattctcctgcctcagcctcccaac 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875 tactatgtaacccaagctggccttaaacttgtggcaattctcctgcctcagcctcccaac 816

                                                                       
Query: 180 tgccttgtccaaataattttatattcttattcttttggttgtgagcctagcctttaatag 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 tgccttgtccaaataattttatattcttattcttttggttgtgagcctagcctttaatag 756

                                                                       
Query: 240 tggagccatctgattagcgacaattacatagtcttaaagatttgtgaattctttctcaca 299
           |||||||||||||  |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 755 tggagccatctgaccagcgacaattacatagtcttaaagatttgtgaatgctttctcaca 696

                                                                       
Query: 300 tttcatgggcttccttcactgtttagtgtatcttttgggcttatagtttttgaggagaac 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 tttcatgggcttccttcactgtttagtgtatcttttgggcttatagtttttgaggagaac 636

                                                                       
Query: 360 gaaatatctttgattgaaaaaagaaaaacaaaaagaagggggaaattttaattaggctgt 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 gaaatatctttgattgaaaaaagaaaaacaaaaagaagggggaaattttaattaggctgt 576

                                                                       
Query: 420 gaaatttaaattagacctggggagtccgacacctcctttgggacaaactcctttctcaca 479
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 575 gaaatttaaattagacctggggagtccgacacctc-tttgggacaaactcctttctcaca 517

                                                                       
Query: 480 tgctgagagcagctagaagcacagacaccttggccttggcagttccttttgtgtataaag 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 tgctgagagcagctagaagcacagacaccttggccttggcagttccttttgtgtataaag 457

                                                                       
Query: 540 ttcagaatctgttcaacccgtgggggaagacagtgtagagagacaaaaagtgagcgcatg 599
           ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 456 ttcagaatctgttcaacccgtgggggaagacagtgtagacagacagaaagtgagcgcatg 397

                         
Query: 600 tacctgaatagttg 613
           ||||||||||||||
Sbjct: 396 tacctgaatagttg 383


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1012
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1002
Effective search space:   604206
Effective search space used:   604206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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