Query= MSMg01no507_m19.b1 MSMg01no507_m19.b1 CHROMAT_FILE:
MSMg01no507_m19.b1 PHD_FILE: MSMg01no507_m19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:28 2005
(691 letters)
>mm_chr3_133911692_133912780
Length = 1089
Score = 1189 bits (615), Expect = 0.0
Identities = 669/687 (97%), Gaps = 2/687 (0%)
Strand = Plus / Minus
Query: 5 gaattcagcaaaggcttgcaaaagctaagcccagctaatctctctggaactaattttgcc 64
||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 889 gaattcagcaaaggcaaggaaaagctaagcccagctaatctctctggaactaattttgcc 830
Query: 65 attgtgatgagtgaaggaaaagaagtctgactggttctaatgggcctgatcccagatcca 124
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 829 attgtgatgagtgaaggaaaagaagtctgactggttctaatgggcctgatcccagaacca 770
Query: 125 tctgagacatctcacagactgtaatacattaacaattgctgttcatttctgatttgagca 184
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 769 tctgagacatctcacaaactgtaatacattaacaattgctgtttatttctgatttgagca 710
Query: 185 gactcaagagtgacctaaagcccaatgctttcccaatctgcagcatcctgtagcctgcct 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 gactcaagagtgacctaaagcccaatgctttcccaatctgcagcatcctgtagcctgcct 650
Query: 245 gtactcttcccccactctgtacaccctgtgtttctaatattccccttcccttattcagag 304
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 gtgctcttcccccactctgtacaccctgtgtttctaatattccccttcccttattcagag 590
Query: 305 cctataacatatacctaaaaatacagcaaaaaaattcttaatatgacatgaaagactacc 364
|||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |||
Sbjct: 589 cctataacatatacctcaaaatacagcaaaaaa-ttcttaatatgacatgaaagaccacc 531
Query: 365 cacagtagcacttcagtcactgtatctctgtgccccttatccagtatggagaacaaaact 424
|||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 530 cacagtagcactgcagtcaccctatctctgtgccccttatccagtatggagaacaaaact 471
Query: 425 ggggtgaaccaggtccacaagtgtgcagttgcttcttgagttgtctccaacgttcaagtc 484
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 470 ggggtgaaccaggtccacaagtgtgcagttgcttcttgagttgtcta-aacgttcaagtc 412
Query: 485 tccaatttataattatttcacttcttagatggcaattgaacataagaaaaagtaactaag 544
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 411 tccaatttataattatttcacttcttagatggcaattgaacataagaagaagtaactaag 352
Query: 545 aaccttggataaaggactaagatcttgagttagggaatcataaaggtactggcagacagc 604
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 351 aaccttagataaaggactaaaatcttgagttagggaatcataaaggtactggcagacagc 292
Query: 605 agttggaaagaaggaaaagggcttccttaaacctggacacattgtagctgtctgtataca 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 agttggaaagaaggaaaagggcttccttaaacctggacacattgtagctgtctgtataca 232
Query: 665 catccatgtatctactgaagttgcatt 691
|||||||||||||||||||||||||||
Sbjct: 231 catccatgtatctactgaagttgcatt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 691
Length of database: 1089
Length adjustment: 10
Effective length of query: 681
Effective length of database: 1079
Effective search space: 734799
Effective search space used: 734799
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no507_m19.g1 MSMg01no507_m19.g1 CHROMAT_FILE:
MSMg01no507_m19.g1 PHD_FILE: MSMg01no507_m19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:28 2005
(572 letters)
>mm_chr3_133767458_133768429
Length = 972
Score = 1098 bits (568), Expect = 0.0
Identities = 571/572 (99%)
Strand = Plus / Plus
Query: 1 aaagatggtgccaccaagtcaggtaggtaatagtaataggacaaagacatggctcctgat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaagatggtgccaccaagtcaggtaggtaatagtaataggacaaagacatggctcctgat 260
Query: 61 tgcttctctggttggtcttgcttcatctttcgaaaaccctgtatcacatactagatcttt 120
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 261 tgcttctctggttggtcttgcttcatctttcaaaaaccctgtatcacatactagatcttt 320
Query: 121 actgtagctgtacgggagcccaaggaaccaaagtccagacagatggcagaaaccaaccaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actgtagctgtacgggagcccaaggaaccaaagtccagacagatggcagaaaccaaccaa 380
Query: 181 ggaatttctaagaagtaactggtgacaaaactaagtcccaacagctaatccacagctgca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggaatttctaagaagtaactggtgacaaaactaagtcccaacagctaatccacagctgca 440
Query: 241 agctgacattaaaatataaattttaaaagtacctttatttctagctaaagaaacatgtct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agctgacattaaaatataaattttaaaagtacctttatttctagctaaagaaacatgtct 500
Query: 301 taatagtttataatattagttgtataattattctatattaattttcttgtcccactcaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taatagtttataatattagttgtataattattctatattaattttcttgtcccactcaaa 560
Query: 361 tgagcaggatgtacactttctaactaatgtagcagtgactgtatctttaggttcatctgt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgagcaggatgtacactttctaactaatgtagcagtgactgtatctttaggttcatctgt 620
Query: 421 gaatccagttctatttatatctaaatatatcgcctgcctttgggggttatattaagagtt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaatccagttctatttatatctaaatatatcgcctgcctttgggggttatattaagagtt 680
Query: 481 aagttgccagagtagatttattggcaatgatcatatctgacttcaaagttttgctctctg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aagttgccagagtagatttattggcaatgatcatatctgacttcaaagttttgctctctg 740
Query: 541 agctggccaccccctgtgcctgcttatcaaga 572
||||||||||||||||||||||||||||||||
Sbjct: 741 agctggccaccccctgtgcctgcttatcaaga 772
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 972
Length adjustment: 10
Effective length of query: 562
Effective length of database: 962
Effective search space: 540644
Effective search space used: 540644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
