Query= MSMg01no507_m21.b1 MSMg01no507_m21.b1 CHROMAT_FILE:
MSMg01no507_m21.b1 PHD_FILE: MSMg01no507_m21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:28 2005
(550 letters)
>mm_chr3_28490335_28491285
Length = 951
Score = 934 bits (483), Expect = 0.0
Identities = 528/543 (97%), Gaps = 1/543 (0%)
Strand = Plus / Minus
Query: 9 tcttggctaa-ttccatcctgtatagtgtaacaagaggagagagaataacgggcatggtg 67
|||||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 751 tcttggctaaggtacatcctgtatagtgtaacaagaggagagagaataacgggcatgttg 692
Query: 68 atcccagacaagcaattatttgtttcacagaaaaaagaattcagaggaacacaagggtga 127
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 691 atcccagacaagcaattatttgtttcacagaagaaagaattcagaggaacacaagggtga 632
Query: 128 gatatcatcataggaactgactgaataatttggattacagacccaaagcacagacatttc 187
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 gacatcatcataggaactgactgaataatttggattacagacccaaagcacagacatttc 572
Query: 188 caacactggacttggactgtattggcgtaagcccagagaataaaacaattatgtgtgtag 247
||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 571 caacattggacttggactgtattggcgtaagaccagagaataaaacaattatgtgtgtag 512
Query: 248 atctggcgcctggctggatatagccctcatttatctaacatatcaagtttgttactcttg 307
||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 511 atctggctcctggctggatatagccctcatttagctaacatatcaagtttgttactcttg 452
Query: 308 tggtttcttttttgaggaaaaaaataatcaagctcttttgaagatttagctgaatgttat 367
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 451 tggtttcttttctgaggaaaaaaataatcaagctcttttgaagatttagctgaattttat 392
Query: 368 gtggaagagttgtccattttcagtccgtctgccaggaatcaataccgttctataattaca 427
||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 391 gtggaagagttatccattttcagtccgactgccaggaatcaataccgttctataattaca 332
Query: 428 tgccattcaagtttccacacaaggtatacacaacattgactgatactcaaaaaggtaagg 487
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 tgccactcaagtttccacacaaggtatacacaacattgactgatactcaaaaaggtaagg 272
Query: 488 tttcccaagtgttctgcaccttctgagaaacacactaaagaaatggctaataattaacaa 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 tttcccaagtgttctgcaccttctgagaaacacactaaagaaatggctaataattaacaa 212
Query: 548 tga 550
|||
Sbjct: 211 tga 209
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 951
Length adjustment: 10
Effective length of query: 540
Effective length of database: 941
Effective search space: 508140
Effective search space used: 508140
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no507_m21.g1 MSMg01no507_m21.g1 CHROMAT_FILE:
MSMg01no507_m21.g1 PHD_FILE: MSMg01no507_m21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:28 2005
(600 letters)
>mm_chr3_28349999_28350998
Length = 1000
Score = 1075 bits (556), Expect = 0.0
Identities = 590/602 (98%), Gaps = 2/602 (0%)
Strand = Plus / Plus
Query: 1 agtaattaaattcaaccaatgttttttgagtgcctgttgtatgcgcaatgtgttagggca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 agtaattaaattcaaccaatgttttttgagtgcctgttgtatgcgcaatgtgttagggca 258
Query: 61 taaaagggagattttgaagcttataatcaaatattggagctaaagcaagtgcttaacact 120
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 259 taaaagggagattttgaagcttataatcaaatattggagctaaagcaagtacttaacact 318
Query: 121 caagggtaattctgagaaagaagcttaattgaaatttatttaattaattaaaattaaatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 caagggtaattctgagaaagaagcttaattgaaatttatttaattaattaaaattaaatt 378
Query: 181 tgcatgtaacagatctgagctgtagcatcctacatgtcaattatctttttcattttgatc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tgcatgtaacagatctgagctgtagcatcctacatgtcaattatctttttcattttgatc 438
Query: 241 caacttaaataattatgtacagtgggctgtaacaaatggattgggaaatatcaatgcata 300
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 439 caacttaaataattacgtacagtgggctgtaacaaatggattggggaatatcaatgcata 498
Query: 301 tggatatgatgaagaaatggtcatttctttttaagaacttgtgtgtgtgtgtgtgtgtgt 360
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tggatatgatcaagaaatggtcatttctttttaagaacttgtgtgtgtgtgtgtgtgtgt 558
Query: 361 gtgtgcgcgcgcgc--gcgtgcacgcgcaatgaaagtcaaatactttaataaaaatggct 418
||||| | | | || |||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 559 gtgtgtgtgtgtgcacgcgtgcacgcgcaatgtaagtcaaatactttaataaaaatggct 618
Query: 419 tttttgtaatgagtgctttgagactctatagaaagtagagcttaatcttcaaagaaaaaa 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 tttttgtaatgagtgctttgagactctatagaaagtagagcttaatcttcaaagaaaaaa 678
Query: 479 atttttaagaaagaaatggcatttaggtttggtctttaacaagaaatagtatgttgatag 538
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 acttttaagaaagaaatggcatttaggtttggtctttaacaagaaatagtatgttgatag 738
Query: 539 gtgggcatgagcaatctagggtaaagactgggcttgaaaactggtcaaatggatgtgtgt 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 gtgggcatgagcaatctagggtaaagactgggcttgaaaactggtcaaatggatgtgtgt 798
Query: 599 ta 600
||
Sbjct: 799 ta 800
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1000
Length adjustment: 10
Effective length of query: 590
Effective length of database: 990
Effective search space: 584100
Effective search space used: 584100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
