BAC Information

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BAC

Clone NameMSMg01-507N12
Chromosome3 (Build37)
Map Location 45,856,114 - 45,856,443
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC676484, LOC100039296, Pcdh10, LOC100039282, LOC433580, LOC671801
Downstream geneEG241989, LOC545517
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-507N12.T7 (MSMg01no507_n12.b1)MSMg01-507N12.TJ (MSMg01no507_n12.g1)
ACCAG581895AG581896
length757771
length of high quality
(start - end)
400 (330 - 729)328 (333 - 660)
definitionCHROMAT_FILE: MSMg01no507_n12.b1 PHD_FILE: MSMg01no507_n12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:36:31 2005CHROMAT_FILE: MSMg01no507_n12.g1 PHD_FILE: MSMg01no507_n12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:36:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCAAATACCGCG
GAATCTTCTTGAAGTTTCTGTAAATTGCGAATTGTATCTTGTATATTGGG
TATTCTAAGCTTCTGGGCTAATATCCACTTATCAGTTAGTATATATCATG
TGAGTTCTTTTGTGATTAGGTTATCTTACTCAGGATGATGCCCTCCAGGT
CCATTCATTTGCCTAGGAATTTCATAAATTCATTCTTTTTAATAGCTGAG
TAGTAATCCATTGTGTAAATGTACCACATTTTCTGTATCCATTCCTCTGT
TGAGGGGCATCTGGGTTCTTTCTTGTTTCTGGTTATTAGAAATAAGGCTG
CTATGAACATAGTTGAGCATGTGTCCTTCTTACAAGTTGGAATATCTTCT
GGATATATGCCCAGGAGCGCCACTGTGGGCCAATTTTCTGAGGAACCACC
AGACTGATTTCCAGATTGGTTATACAATCTTGCAATTCCACCAACAATGG
AGGAGTGTTCCTCTTTTTCCACATCCTTGCCAGCATCTACTGTCACCGGA
ATTTTTGATCTTAGCTATTTTGGCTGTTGTGAGGAGGAATCTCAGTGTTG
TTTTGATTTGCATTTCCCTGATGATTAAGGATGCTGACCATTTCTCAGGT
GCTTCTCAGCCATTCGGTATTCCTTAGGTGAGAACTCTTTGTTTAGCTCT
GAGCCGCATTTTTAAATGGGATTATTTGATTTTCTGGAGTCCACCTTCTT
GATATAA
CGATGCTGTGGGAGGTCTGGNGGNCGGCTGGCCTTTCAATACAGGTGAAC
TANAGAAGGATTTCCGGAAAACGCGGGCAGANNACAAAGACAAGCAAACA
TATAGGGAGATAAATTAATTAATCACAAGAAGAAGAAGAAGAAGAAGAAG
AAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAA
GAAGAAGAAACCAAGAAGGTCAAGGATGAGGCTGTAGATAACATTGTGTT
TCTCATATTATGAGCAGAGAGACATCCAAACTATCGGTGAGTACAAGATA
TCACTGAATTATGTTTTGATATGGGATACGTCAGATAAAGCTTATTATCA
AAAACCTTTGGGAGTAGCTATTTAACTATTGTGTTTTCATCACACTTAGG
TGGGTAACTTTCATAGAACACGCACAAAAACTAACTTGAACTGACATCAA
TTGTGCTCCTTTATATTTTTTTATTTAAAACAAAAACAAATTCTTTTTTT
TTTTAGATTTTATCTCCCAATACCCACTCTATATCTACTCCACAAGCTCC
AAAATACTCACTTCTCTTCTGTGGACCAATTTCTCATTCATCTATTTTAT
ATAGATCCATAAGAAGATTAAGCAAATTTTATTGAGTAGCTTGAGGTACT
TTGGAATCATCATCATTATCATCACCATCATCACCATCATTATTATTATT
ATCCAGTGTCTTACTGTATAGCTCTAGATACCCTGGAACTCACTTTGTAG
AACAGACTAGTTTTGAACTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no507_n12.g1 MSMg01no507_n12.g1 CHROMAT_FILE:
MSMg01no507_n12.g1 PHD_FILE: MSMg01no507_n12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:31 2005
         (328 letters)



>mm_chr3_45855916_45856643
          Length = 728

 Score =  596 bits (308), Expect = e-175
 Identities = 324/330 (98%), Gaps = 2/330 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agataaagcttattatcaaaaacctttgggagtagctatttaactattgtgttttcatca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 agataaagcttattatcaaaaacctttgggagtagctatttaactattgtgttttcatca 258

                                                                       
Query: 61  cacttaggtgggtaactttcatagaacacgcacaaaaactaacttgaactgacatcaatt 120
           ||||||||||||||||||||||||||||  || ||||||||||||||||||||| |||||
Sbjct: 259 cacttaggtgggtaactttcatagaacatacataaaaactaacttgaactgacaacaatt 318

                                                                       
Query: 121 gtgctcctttatatttttttatttaaaacaaaaacaaattcttttttttttt--agattt 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||
Sbjct: 319 gtgctcctttatatttttttatttaaaacaaaaacaaattctttttttttttttagattt 378

                                                                       
Query: 179 tatctcccaatacccactctatatctactccacaagctccaaaatactcacttctcttct 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tatctcccaatacccactctatatctactccacaagctccaaaatactcacttctcttct 438

                                                                       
Query: 239 gtggaccaatttctcattcatctattttatatagatccataagaagattaagcaaatttt 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 gtggaccaatttctcattcatctattttatatagatccataagaagattaagcaaatttt 498

                                         
Query: 299 attgagtagcttgaggtactttggaatcat 328
           ||||||||||||||||||||||||||||||
Sbjct: 499 attgagtagcttgaggtactttggaatcat 528


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 728
Length adjustment: 9
Effective length of query: 319
Effective length of database: 719
Effective search space:   229361
Effective search space used:   229361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)