Query= MSMg01no507_p03.b1 MSMg01no507_p03.b1 CHROMAT_FILE:
MSMg01no507_p03.b1 PHD_FILE: MSMg01no507_p03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:40 2005
(685 letters)
>mm_chr3_65302673_65303757
Length = 1085
Score = 1295 bits (670), Expect = 0.0
Identities = 682/686 (99%), Gaps = 2/686 (0%)
Strand = Plus / Minus
Query: 1 acgatttattcagcaataaccccaaagataatacctttttttttcctttatagtactttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 885 acgatttattcagcaataaccccaaagataatacctttttttttcctttatagtactttt 826
Query: 61 ggaacttggctgttgaagttgcagcccttacccacccaagaagtccaatcataccacgcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 825 ggaacttggctgttgaagttgcagcccttacccacccaagaagtccaatcataccacgcc 766
Query: 121 actctgagcaacccctcttgcaggcagtaggcccactatggaactcatctcatttattac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 actctgagcaacccctcttgcaggcagtaggcccactatggaactcatctcatttattac 706
Query: 181 cctctctgagacagagacaacactcagtgaccgtcaatgatgttcatatatcagactagg 240
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 705 cctctctgagacagagacaacactcagtgaccatcaatgatgttcatatatcagactagg 646
Query: 241 aatctgtgttctagatagttgctcaaaaacagaagaaaggggcactcatgctagttggag 300
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 aatctgtgttctagagagttgctcaaaaacagaagaaaggggcactcatgctagttggag 586
Query: 301 ggaggtatagtggtgggtagatatggtcaaaatacgttgtatacatgtacagaggataca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 ggaggtatagtggtgggtagatatggtcaaaatacgttgtatacatgtacagaggataca 526
Query: 361 taaaatattatttacaaataataaagcaaaacagcaactcttagaaaaagacaatactgc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 taaaatattatttacaaataataaagcaaaacagcaactcttagaaaaagacaatactgc 466
Query: 421 agaaggtaccacatcatcacaaattatgtcttactcaaacaaaggagaacttctttttta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 agaaggtaccacatcatcacaaattatgtcttactcaaacaaaggagaacttctttttta 406
Query: 481 gaacataccctttgaaaaggactagatgacaggtggagtgatacatgtctgtaatcccag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 gaacataccctttgaaaaggactagatgacaggtggagtgatacatgtctgtaatcccag 346
Query: 541 ttaagaccactcaaacctccttacatccattacagatggaaacaaagtcatcaagagtgt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 ttaagaccactcaaacctccttacatccattacagatggaaacaaagtcatcaagagtgt 286
Query: 601 ctctgtcctatttctgctgaacatgacatctcagtagttcagcactattacactggggaa 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 285 ctctgtcctatttctgctgaacatgacatctcagtagttcagcactattacactggg-aa 227
Query: 661 -aaaaacctctcacagcttttgatct 685
|||||||||||||||||||||||||
Sbjct: 226 caaaaacctctcacagcttttgatct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1085
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1075
Effective search space: 725625
Effective search space used: 725625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no507_p03.g1 MSMg01no507_p03.g1 CHROMAT_FILE:
MSMg01no507_p03.g1 PHD_FILE: MSMg01no507_p03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:40 2005
(612 letters)
>mm_chr3_65119030_65120041
Length = 1012
Score = 1180 bits (610), Expect = 0.0
Identities = 610/610 (100%)
Strand = Plus / Plus
Query: 3 gcttctatttagaaatatccttttgtctcctcctctgaaagcttgctttgctgagtacac 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gcttctatttagaaatatccttttgtctcctcctctgaaagcttgctttgctgagtacac 262
Query: 63 cagccattattattaattattagttattactattactattatcatgtattcactttacaa 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 cagccattattattaattattagttattactattactattatcatgtattcactttacaa 322
Query: 123 cccaatatcagcccttcctatccttccacttcctcctcttacacatcctccctccattcc 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 cccaatatcagcccttcctatccttccacttcctcctcttacacatcctccctccattcc 382
Query: 183 ttcttctcttgctattttcacaattctcttcttttaacttttgagacctgattataacat 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ttcttctcttgctattttcacaattctcttcttttaacttttgagacctgattataacat 442
Query: 243 gtcaacttggggtagatttggttaaatcacatctgttacctttgactttcctccatctgg 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gtcaacttggggtagatttggttaaatcacatctgttacctttgactttcctccatctgg 502
Query: 303 gtatttggttctctctctaggtttggaaagctttttgttactatcttttttaggaaatac 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gtatttggttctctctctaggtttggaaagctttttgttactatcttttttaggaaatac 562
Query: 363 attaatatcgtcatacatttttatgtatatacaaacctatgtgtgaatcatgcttattcc 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 attaatatcgtcatacatttttatgtatatacaaacctatgtgtgaatcatgcttattcc 622
Query: 423 tataaaaccagtttttaatatactttatttattaaatgtgttctttgataacgcatttta 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tataaaaccagtttttaatatactttatttattaaatgtgttctttgataacgcatttta 682
Query: 483 tacgaatgcattgcataatacattcgggttactctctcttcctcctctcccatcttcctc 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 tacgaatgcattgcataatacattcgggttactctctcttcctcctctcccatcttcctc 742
Query: 543 ttcctctgtctaactcccttctagctgcaagtcgctttctcaaattctggtccttttgtt 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 ttcctctgtctaactcccttctagctgcaagtcgctttctcaaattctggtccttttgtt 802
Query: 603 ttgttttgtt 612
||||||||||
Sbjct: 803 ttgttttgtt 812
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space: 603204
Effective search space used: 603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
