NNNTTACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGAT
CCGCGGAATTCTATCATATCTTCATTTTTACATTGTAAATTCCCTTTCCA
CAATTCTGGACAACTCTTTAATGGAATCCCTGTATCATATAAACTATTCT
ATTTAGGTGATGCTTGTGTCAAAGTCACCAGTAGATTGTTTGCATTCTTT
CCCATATCTGTGTTGTTTTCTCAGATTCTGTCTTTGACATCATGAGACTG
TATTTAAAATGGATCTCCCCAACAACCTCACATCCTTAGTGACAGATCTT
CCAACCAGAACCAGCTGATCCCAAAGCACATTTTTAATCTTAACTTATTT
TATAAGAGGCTAATGGTGCTTCTCTTTGAGAATCCACAAATATCTCCAAT
TATAACCTATTTAAAAATTAGTCTCATTTCCATCTCCACACTTGCTTATT
TACATACATTTTCTACTCCAGTTGGTAGGATTTTCTCATGTCCTACCATT
TAAATGAGAAACTTCACAATGGGTCACTAGCACTTTTAATTTTGTGCAAG
AACAATATTTGTTTATTTTCAGTGTTCCCCTCTCTTCTTTTCCTTTACCA
CCTGGTGCTGAGCTTCAGGCTTTTCTTGGTAGTGCTTTAGTTACTTTTCC
ACTGCTGTGATAAAATACCATGGCCAAGGCTACTCATGGAAAGAAGGGTT
TATTTGAGGTTTATAGTTCCTGAAGGATACGATTCCATCACCATCCCCGT
GGGGAGCATGGAGCN

NNNNCCCCGAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGGCCAACAGCTCTAT
AGCTCATGTCTAAATGAAGTTTATGTAGCACATCAATTTTCCATATAAGA
ACACTGCACAAAGAAGCATAGTATTGCTTTCCTGAGGTAATTCTGGGGGC
CATTTTCAATAGCAAAATCATTCAAATGAAATGTGAAAATAGTTGACTGG
TGTAAATATTTATTACATGAATTCTTAAACAAGAAGGGACATCACTATCT
TATCAAACTTCAGGTGATTGTTGCATATTTGGTGACCCAAACACTCATGT
TCTTTACACATGCCTGTAATGATAATAAGATTTAAATACTTACTTGTAGA
CATGTTTTATAAAGTAGGTGAATATAAAAACTACAAATAAGCCAGGTGTG
GTGGCGCATGCCTTTAATCATAGCACTAGGGAGGCAGAGGCAGGTGAATT
TCTGAGTTTGAGGTCAGCCTGATCTACAGAGTGAGTTCAAGGACAGCCAG
GGCTACACAGAGAAACCCTGTCTTGAAAAAATCAAAGCCTACCAAACAAA
CAAAAACAAAAACAAACAAACAAAACACCTACCAATAATGAAAATTGATA
ATATGCATAAGGTGATACCAGCAACATCAAAAGATACCAGCAACCAAACC
AACTGAGATTTATCCCTTGAATGTAAAGTGATTTCCTATACAAATCCCAT
TTATAACCANTATGAAGAAGAAAATACNAA

Query= MSMg01no508_c21.b1 MSMg01no508_c21.b1 CHROMAT_FILE:
MSMg01no508_c21.b1 PHD_FILE: MSMg01no508_c21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:37:00 2005
         (602 letters)



>mm_chr3_17425971_17426972
          Length = 1002

 Score = 1056 bits (546), Expect = 0.0
 Identities = 585/598 (97%), Gaps = 2/598 (0%)
 Strand = Plus / Minus

                                                                       
Query: 6   ggaattctatcatatcttcatttttacattgtaaattccctttccacaattctggacaac 65
           |||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 802 ggaattctatcatatcatgatttttacattgtaaattccctttccacaattttggacaac 743

                                                                       
Query: 66  tctttaatggaatccctgtatcatataaactattctatttaggtgatgcttgtgtcaaag 125
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 742 tctttaatggaatccctgtatcatagaaactattctatttaggtgatgcttgtgtcaaag 683

                                                                       
Query: 126 tcaccagtagattgtttgcattctttcccatatctgtgttgttttctcagattctgtctt 185
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 682 tcaccagtagattgtttgcattctttcccttatctgtgttgttttctcagattctgtctt 623

                                                                       
Query: 186 tgacatcatgagactgtatttaaaatggatctccccaacaacctcacatccttagt-gac 244
           ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || 
Sbjct: 622 tgacatcatgagactgtatttaaaacggatctccccaacaacctcacatccttagtgga- 564

                                                                       
Query: 245 agatcttccaaccagaaccagctgatcccaaagcacatttttaatcttaacttattttat 304
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 563 agatcttccaaccagaaccagctgatcccaaagcacatttttaatcttaacttattttgt 504

                                                                       
Query: 305 aagaggctaatggtgcttctctttgagaatccacaaatatctccaattataacctattta 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 aagaggctaatggtgcttctctttgagaatccacaaatatctccaattataacctattta 444

                                                                       
Query: 365 aaaattagtctcatttccatctccacacttgcttatttacatacattttctactccagtt 424
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 aaaattagtttcatttccatctccacacttgcttatttacatacattttctactccagtt 384

                                                                       
Query: 425 ggtaggattttctcatgtcctaccatttaaatgagaaacttcacaatgggtcactagcac 484
           |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct: 383 ggtaggattttctcatgtcccaccatttaaattagaaacttcacaatgggtcactagcac 324

                                                                       
Query: 485 ttttaattttgtgcaagaacaatatttgtttattttcagtgttcccctctcttcttttcc 544
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ttttaattttgtgctagaacaatatttgtttattttcagtgttcccctctcttcttttcc 264

                                                                     
Query: 545 tttaccacctggtgctgagcttcaggcttttcttggtagtgctttagttacttttcca 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tttaccacctggtgctgagcttcaggcttttcttggtagtgctttagttacttttcca 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1002
Length adjustment: 10
Effective length of query: 592
Effective length of database: 992
Effective search space:   587264
Effective search space used:   587264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)