Query= MSMg01no508_e02.b1 MSMg01no508_e02.b1 CHROMAT_FILE:
MSMg01no508_e02.b1 PHD_FILE: MSMg01no508_e02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:37:06 2005
(596 letters)
>mm_chr3_144550323_144551318
Length = 996
Score = 880 bits (455), Expect = 0.0
Identities = 486/497 (97%), Gaps = 5/497 (1%)
Strand = Plus / Minus
Query: 5 gaattctcagcatagtcttctattgaatattacaagtacaaattcaatcctttgccaaca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 gaattctcagcatagtcttctattgaatattacaagtacaaattcaatcctttgccaaca 434
Query: 65 tgtctatagtttagtaggttttgacacttagccttttacaaaattctctatcatcagcca 124
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tgcctatagtttagtaggttttgacacttagccttttacaaaattctctatcatcagcca 374
Query: 125 ctattgtgacttgccatcatctacttatacacaatgatttggaaacctcttataattgat 184
||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 373 ctattgtgacttgccattatctacttatacacaatgatttggaaaactcttataattgat 314
Query: 185 gggttgatattctccattttcaagtttcctttgtattttgtgttcagaatccttttgggt 244
||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 313 gggttgatactctccattttcaagtttcctttgtattttgagttcagaatccttttgggt 254
Query: 245 ttgaagcttgaccacttttgcaaacactgatacttcatgtgtgtgggttttttgggtttt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 253 ttgaagcttgaccacttttgcaaacactgatacttcatgtgtgtgggttttttgg-tttt 195
Query: 305 tttgtttgttt-gttttgttttgtttgtttttttttatctaaaacattgtagggattctg 363
||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 194 ttt--ttgttttgttttgttttgtttgttttttttaatctaaaacattgtagggattctg 137
Query: 364 gggaggaacttagaaggaaaaccataagacttctgattaggagacattaagaaaccacta 423
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 gggagga-cttagaaggaaaaccataagacttctgattaggagacattaagaaaccacta 78
Query: 424 ttaggcacctggatatctctgaagatgaaagtttcctacaggatctctgattgttaactc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77 ttaggcacctggatatctctgaagatgaaagtttcctacaggatctctgattgttaactc 18
Query: 484 tccatggcctacaaact 500
|||||||||||||||||
Sbjct: 17 tccatggcctacaaact 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 996
Length adjustment: 10
Effective length of query: 586
Effective length of database: 986
Effective search space: 577796
Effective search space used: 577796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no508_e02.g1 MSMg01no508_e02.g1 CHROMAT_FILE:
MSMg01no508_e02.g1 PHD_FILE: MSMg01no508_e02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:37:06 2005
(648 letters)
>mm_chr3_144289444_144290491
Length = 1048
Score = 1160 bits (600), Expect = 0.0
Identities = 636/648 (98%)
Strand = Plus / Plus
Query: 1 tgactctgtactcagttccttcagcctgttacatcagctggaccatcagcctgctttgta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgactctgtactcagttccttcagcctgttacatcagctggaccatcagcctgctttgta 260
Query: 61 gtctggggatttactggttttatgctaactggacaaaagctagagtcctcagagacaaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtctggggatttactggttttatgctaactggacaaaagctagagtcctcagagacaaag 320
Query: 121 gagcctcaattgagaaaatgcttccataagacccagctataaggcattttcttattagtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagcctcaattgagaaaatgcttccataagacccagctataaggcattttcttattagtg 380
Query: 181 tcatggggcagggtccagcccactgtagatggtacagcccctgggctggtggtcttgagt 240
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct: 381 tcatggggcagggtccagcccactgtaggtggtacagcccctgggctggtggtcttgaat 440
Query: 241 tctgtaagaaagtgggctgagcaagccatgaagagcaagccagtaagcagcaccccttca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctgtaagaaagtgggctgagcaagccatgaagagcaagccagtaagcagcaccccttca 500
Query: 301 tggcttctgcatcagctcctgcctccaggatcctaccctgtttgaattcctgtctgactt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tggcttctgcatcagctcctgcctccaggatcctaccctgtttgaattcctgtctgactt 560
Query: 361 ctttcgataatgaacagcaatgtggaagtgtaagctgaatgacgccctccaagttgccgt 420
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 561 ctttcgataatgaacagcaatgtggaagtgtaagctgaatgacgttctccaagttgccgt 620
Query: 421 ttgactgtggtattttattgtagcaatagaaatcctaataaaggcaaggggttcatttct 480
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttgactgtggtattttattgcagcaatagaaatcctaataaaggcaaggggttcatttct 680
Query: 481 tcttctaagctttgaaaggcttttggaacaaggtgaacctcccgggtaccttcacaggag 540
|||| |||||||||||||||||||| |||||||||| |||||||||| ||||||||||||
Sbjct: 681 tcttttaagctttgaaaggcttttgaaacaaggtgagcctcccgggtgccttcacaggag 740
Query: 541 aacaccattgcgtgtgggtggctcatgctcgctagaatctgcttccccaattcttagaac 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aacaccattgcgtgtgggtggctcatgctcgctagaatctgcttccccaattcttagaac 800
Query: 601 ccttcacatcacaaggattgcctggcataggtaggtctctgttttcca 648
|||||||||||||||||| ||||||| | |||||||||||||||||||
Sbjct: 801 ccttcacatcacaaggatcgcctggcgtgggtaggtctctgttttcca 848
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space: 662244
Effective search space used: 662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
