Query= MSMg01no508_h19.b1 MSMg01no508_h19.b1 CHROMAT_FILE:
MSMg01no508_h19.b1 PHD_FILE: MSMg01no508_h19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:37:24 2005
(697 letters)
>mm_chr3_26021477_26022572
Length = 1096
Score = 1114 bits (576), Expect = 0.0
Identities = 659/696 (94%), Gaps = 24/696 (3%)
Strand = Plus / Minus
Query: 5 gaattctgcttcatt-ttcacaattggacaattgaaaaaagttcttttaaagtaattttt 63
||||||||||||||| ||||| ||| | |||||||||||||||||||||||||||||||
Sbjct: 786 gaattctgcttcattcatcacagttgaaaaattgaaaaaagttcttttaaagtaattttt 727
Query: 64 aagagttagtt-tttcgattactttaatgttactcacctagcaggtcgagtactgatagt 122
||||||||||| ||| ||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 726 aagagttagttcttt-gattactctaatgttactcacctagcaggtcaagtactgatagt 668
Query: 123 gctggagaaaactagaaaactaactaaaggcaggcaatcatcttcattaaagcatgtaga 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 gctggagaaaactagaaaactaactaaaggcaggcaatcatcttcattaaagcatgtaga 608
Query: 183 atgtcacaaaaatcagattgaaacaacagtatagagaaatagcagcagatatatcactgc 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 atgtcacaaaaatcagattgaaacaacagtatagagaaatagcagcagatatatcactgc 548
Query: 243 aacaatcattgcagctttcctaagga-aaattcagattaaccaacagtgaccataattgg 301
||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 547 aacaatcattgtagctttcctaa-gataaattcagattaaccaacagtgaccataattgg 489
Query: 302 ctgcactccaacctggtaatgcagtagcagctttacagagctctcctaatagatgtgtca 361
||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct: 488 ctgcactccaacctggtaatgaagtagcagccttacagagctctcctaatagatgtgtca 429
Query: 362 aaagggaattgtcaggtgtcctacactcgggacaatgctgaagacagattctccttcctt 421
|||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 428 aaagggaattgtcaggtgtcct--actcgggacaatgctgaagacaggttctccttcctt 371
Query: 422 ctcttatggaagagtccccatgctactttctcaagtctttagggatactcttttacagtg 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 ctcttatggaagagtccccatgctactttctcaagtctttagggatactcttttacagtg 311
Query: 482 ctctggcagagtaactttgtggggaatgtctgcaaagagccacaccaaaagcaagttata 541
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 310 ctctggcagagtaactttgtggggaatgtcagcaaagagccacaccaaaagcaagttata 251
Query: 542 aactctcttagagctaaattcctctcagtacctccatgccactccatctgtcttggcaag 601
||||||||||||||||||||||||||||||||||||||| ||| || ||||
Sbjct: 250 aactctcttagagctaaattcctctcagtacctccatgc--ctc------tc----caag 203
Query: 602 gtgaaggtcaggtttacagacctcaggcacagatttaatcttcccttgagaagaatctat 661
|||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||
Sbjct: 202 gtgaaggtcaggtttacagatctcaggcacagatctaatcttcccttgagaag-----at 148
Query: 662 gcattggttgacaccttaattaacaaactctataga 697
||||||||||||||||||||||||||||||||||||
Sbjct: 147 gcattggttgacaccttaattaacaaactctataga 112
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 697
Length of database: 1096
Length adjustment: 10
Effective length of query: 687
Effective length of database: 1086
Effective search space: 746082
Effective search space used: 746082
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no508_h19.g1 MSMg01no508_h19.g1 CHROMAT_FILE:
MSMg01no508_h19.g1 PHD_FILE: MSMg01no508_h19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:37:24 2005
(556 letters)
>mm_chr3_25852150_25853107
Length = 958
Score = 949 bits (491), Expect = 0.0
Identities = 546/571 (95%), Gaps = 15/571 (2%)
Strand = Plus / Plus
Query: 1 ctgacatttgtgctttatggtaaggacaaaataatcttatgatttgtggaaagatcagca 60
|||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||
Sbjct: 188 ctgacatttgtgctttatggtaagaacaaaataatcttatgatttgtgaaaaaatcagcc 247
Query: 61 caagggaatgaatactcactgctaatgaccttcaaacagtgtctcctaactagatcttct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 caagggaatgaatactcactgctaatgaccttcaaacagtgtctcctaactagatcttct 307
Query: 121 gggtcttgatatttttcaaggtactggaaacccaacaagatcaatgaacaggtcagttat 180
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 308 gggtcttgatatttttcaaggtactggaaacccaacaagatcaatgaacatgtcagttat 367
Query: 181 ggtttaggttctgttttgattttgatgataatttaatactaacaataaacacatcaagct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggtttaggttctgttttgattttgatgataatttaatactaacaataaacacatcaagct 427
Query: 241 tattttctggtgattgactccatggttgcatggttg-------ggtttttt-gtttt--- 289
||||||||||| |||||||||||||||||||||||| |||||||| |||||
Sbjct: 428 tattttctggtaattgactccatggttgcatggttgttttttgggtttttttgttttgtt 487
Query: 290 ttgtttt-tttt---tttttggtaaaatgcaaagataaaagttaaattaaaaattcaaat 345
||||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 488 ttgttttgttttgtttttttggtaaaatgcaaagataaaaattaaattaaaaattcaaat 547
Query: 346 cgaaagattattgattcaatttttcagacacagtcattgtaccaatgaaaagacaacctt 405
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 tgaaagattattgattcaatttttcagacacagtcattgtaccaatgaaaagacaacctt 607
Query: 406 gagacaatattttgcatatgctctatgtaaaatagaaggtggtaatcccagtacttgagt 465
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 608 gagacaatattttgcatatgctgtatgtaaagtagaaggtggtaatcccagtacttgagt 667
Query: 466 attttgtgaaggattgtgcttaagatgaaaatcttattaaaagaggaaaatctacagagc 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 attttgtgaaggattgtgcttaagatgaaaatcttattaaaagaggaaaatctacagagc 727
Query: 526 atgttaatataatattgatttatttaatgat 556
|||||||||||||||||||||||||||||||
Sbjct: 728 atgttaatataatattgatttatttaatgat 758
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 958
Length adjustment: 10
Effective length of query: 546
Effective length of database: 948
Effective search space: 517608
Effective search space used: 517608
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
