AATCXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAAGAGGATCCGCGG
AATTCTTTTCTTCAAGCAAATCTTGACATACCATATAAGATACAATCTGA
AAGTCAGTGTCTTCATACATCAACTGCATGGCTTTGTCATTCATGTCTGC
CTACATGGCTTTTAAAACCTTATCATTATAGTGACTGATTCTGTTGAAAT
TTGCCAAGTTATTCTACCACTTTAAGGGTATAAAAGGGTATTTAATTGCA
AGGTTCAACTTGCCATTAGCTGAACCAAGTTTAAATGCAGGTATACTTCT
TCTGTTTTAAATAGCATTTTAATAAAACACAGTATAATTTGAGAATTTTT
AAAAGATCGTTTTAAGAAGGAAAATTGGCCAGAAAAAAAAACTTTGTTGC
ATAGAAATATGATGCTTATAAGTATATAAAGTACTAAGTAGGAATATTTT
ATCCAAGTGGGCTGGGTATCATATTATAGCTATATACTCAATTTGGATAT
GGAGAGTCACAATCCTTTTTTGGATAATTCATCACAGTACCAGACTCTTA
TTTTTCCTTCCCTTTAAAAATCATTTCAGCAGATTTATTTTTCTAAAGAA
TGAGAGCAGGGCTCCTCACTCTAATACTGCCATTTTCTGACATTCATACT
GTCAGATGAGTGCAGAATGGAGCTTTGTTATTCTGAAAAGCACACAATGA
AGTGAGTGTAAACTAAATACTCCTTGCTTTAGCAAACACAGCATACAGAA
A

NCCGAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXATTGGCATTGACTTCTTCATGA
TAACCATTCTCACTGGAGTGAGAGAAATCTGAAATCAGAGAATAGCCTGA
ATTTGCATTTCCCTGATGGCTAATAATGTTGACCAAAATTGATTTAACTT
GAAAAAATAATTCTGAGTGAGGTAACTCAGACCCAGAAAGATAAATATGA
TATGCATTCATTTATATATGGATATTGACTGTTAACTAAATGATAACCAA
CCTTTAATTCATAGATGCATATAGGTTAGAGATAGAGGAAGGAACTGGGA
GACACTATTTCCCCCTTGGAAGGGGATCTAGTATTCTATTCTAAGGGTGG
ACTGGCGGTGGGTGGGGATGAGAACAGGGGAATCAGATGGGGACAGGGAG
AGGAGGTGGGGNTTGGGGGAGANANNTTNNNNNNNNNTNTNNTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTNNTTTNTNTTTTTNTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTNNNTTTNTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTNNTTTTTTNTTNTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTNNNTTTTTNTTTTTTTNTTTTTNTTTTTTTNTTNNTTTTTTNTT
TTTTTTTTTTTTNN

Query= MSMg01no509_f11.b1 MSMg01no509_f11.b1 CHROMAT_FILE:
MSMg01no509_f11.b1 PHD_FILE: MSMg01no509_f11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:33 2005
         (556 letters)



>mm_chr3_81915013_81915969
          Length = 957

 Score =  992 bits (513), Expect = 0.0
 Identities = 542/555 (97%), Gaps = 11/555 (1%)
 Strand = Plus / Plus

                                                                       
Query: 8   gaattcttttcttca--agcaaatcttgacataccatataagatacaatctgaaagtcag 65
           |||||||||||  ||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 gaattcttttc--cagaagcaaatcttgacataccatataagatacaatctgaaagtcag 265

                                                                       
Query: 66  tgtcttcatacatcaactgcatggctttgtcattcatgtctgcctacatggcttttaaaa 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tgtcttcatacatcaactgcatggctttgtcattcatgtctgcctacatggcttttaaaa 325

                                                                       
Query: 126 ccttatcattatagtgactgattctgttgaaatttgccaagttattctaccactttaagg 185
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 326 ccttatcattatagtgactgattctgttgaaatttgccaagttattctagcactttaagg 385

                                                                       
Query: 186 gtataaaagggtatttaattgcaaggttcaacttgccattagctgaaccaagtttaaatg 245
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 386 gtataaaagggtatttaattgcaaggttcaacttgccattagctgagccaagtttaaatg 445

                                                                       
Query: 246 caggtatacttcttctgttttaaatagcattttaataaaacacagtataatttgagaatt 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 caggtatacttcttctgttttaaatagcattttaataaaacacagtataatttgagaatt 505

                                                                       
Query: 306 tttaaaag---atc-gttttaagaaggaaaattggccagaaaaaaaaactttgttgcata 361
           ||||||||   | | |||||||||||||||||||||||||||||||  ||||||||||||
Sbjct: 506 tttaaaaggaga-ctgttttaagaaggaaaattggccagaaaaaaa--ctttgttgcata 562

                                                                       
Query: 362 gaaatatgatgcttataagtatataaagtactaagtaggaatattttatccaagtgggct 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gaaatatgatgcttataagtatataaagtactaagtaggaatattttatccaagtgggct 622

                                                                       
Query: 422 gggtatcatattatagctatatactcaatttggatatggagagtcacaatccttttttgg 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gggtatcatattatagctatatactcaatttggatatggagagtcacaatccttttttgg 682

                                                                       
Query: 482 ataattcatcacagtaccagactcttatttttccttccctttaaaaatcatttcagcaga 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 ataattcatcacagtaccagactcttatttttccttccctttaaaaatcatttcagcaga 742

                          
Query: 542 tttatttttctaaag 556
           |||||||||||||||
Sbjct: 743 tttatttttctaaag 757


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 957
Length adjustment: 10
Effective length of query: 546
Effective length of database: 947
Effective search space:   517062
Effective search space used:   517062
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)