BAC Information

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BAC

Clone NameMSMg01-509I24
Chromosome3 (Build37)
Map Location 141,540,436 - 141,540,776
singlet/doubletsinglet
Overlap geneBmpr1b
Upstream gene4930590L14Rik, Pdha2, Unc5c, LOC100039923
Downstream geneGabarapl2-ps3, Pdlim5, Gbp5, Gbp6, Gbp3, Gbp1, Gbp2, EG621605, Ccbl2, Gtf2b, Pkn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-509I24.T7 (MSMg01no509_i24.b1)MSMg01-509I24.TJ (MSMg01no509_i24.g1)
ACCAG583209AG583210
length779784
length of high quality
(start - end)
660 (44 - 703)341 (327 - 667)
definitionCHROMAT_FILE: MSMg01no509_i24.b1 PHD_FILE: MSMg01no509_i24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:38:49 2005CHROMAT_FILE: MSMg01no509_i24.g1 PHD_FILE: MSMg01no509_i24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:38:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAAGTACTATGCTGAATAGGTAGGGAGAAAGGGGGCAGCCTTGTCTAGT
CCCTGATTTTAGTGGGATTGCTTCCAGCTTCTCACCATTTACTTTGATGT
TGGCTATTGGTTTGCTGTAGATTGGTTTTATCATGTTTAAGTATGGGCTA
TGAATTCCTGATCTTTACAAGACTTTTATCATGAATGGGTGTTGGATTTT
GTCAAATGCTTTCTCCTTATCTGACAAGATGATCATGTGATTTTTGCCTT
TGAGGTTTTTTTATATAGTGTTTTACGTTAATGGATTTCCATATATTGAA
CATATATTCCCTGCATCCCTGGAATGAAACCTACTGGTCAGGATGGATGA
TTGTTTTGATGTATTGCATTTGGGTATTGAGAACTTTATTGAGTATTTTT
GCATTGATATTCATAAGGGAAATTGGTCTGAAGTTCTCTTTGTTGGGTCT
TTCTGTGGTTTAGGTATCAGAGTAATTGTGGCTTTATAGAATGAATTGGG
TAGAGTACCTTCTGCTTCTATTTTATGGAATAGTTTGTGAAGAACTGGAA
TTAGATCTTCTTTGAAGGTCTGATAGAACTCTGCACTAAACCCATCTGGT
CCTGTGCTTTTTTTGGTTGGGAGGCTATTAATGACTGCTTCTATTTCTTA
GAGGATATAGGACTGTTTTGATCATTAACCTGATCATGATTTAACTTTGG
TACCTGGTATCTGTCTAGAAATTTGTCCA
ATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTGATCAGCAGCCAACCCTGCTGGGTTCTC
TGAGGACATTTCTCTTTTGTGCATGATACTCATTTTGTGAGTGAGGAGCC
TATTCCAGTTGAGTCTTCTAATGGATGTATCACAGGGACCATCTTTGTTC
CTTATTCTGGGACAGTGGTTCCCAGCCTATGGACCATGATCCCCAAAGAT
TATCAGAAAACACTGATATTTACATTACAATTTATAACCGTAATTATAAT
TATGAAGTAGCAACAAAATATTTTATGGTTAGAATTATCACAACATGAGG
AACTGTGTGAAAGGGTTGCAACATTAGGAGGGTTGAGAGCCACTGCTAAT
ACTTAGAAGAAGCACATGGCGTTGTCTCATTTCTGCAAGACCATTCTCTA
GTCTTTCCTTCTAAAGCATTACTTCTCAAACTCTTTCTGCTAACAAATAC
CCCACCACACACGCAAAGCTGAGCACGAGTACTTTCCTAAACTACCATCA
GGATCAATTATTAAAGCCATTCATTTAAAAGCTTGCAAATTATTTGTCCT
TTTTAATGTTTTTGTAAGTTTTAGCAGACATGAATTTATTATATGAAATT
GCTATACAAGTTTCAGGTTCTGATTTAATATCTTTACAGACCAGCAGTGA
GCAGTTTGCTGTTCTGACTCTTGTACTCCTAGGCAAAGCAGCTTGTAAGT
CAAGGGTACACTTTTCTATGGGTTTATAATATAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no509_i24.g1 MSMg01no509_i24.g1 CHROMAT_FILE:
MSMg01no509_i24.g1 PHD_FILE: MSMg01no509_i24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:50 2005
         (341 letters)



>mm_chr3_141540160_141540900
          Length = 741

 Score =  613 bits (317), Expect = e-180
 Identities = 335/341 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggttagaattatcacaacatgaggaactgtgtgaaagggttgcaacattaggagggttga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 617 ggttagaattatcacaacatgaggaactgtgtgaaagggttgcaacattaggaaggttga 558

                                                                       
Query: 61  gagccactgctaatacttagaagaagcacatggcgttgtctcatttctgcaagaccattc 120
           ||||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 557 gagccactgctaagaattagaagaagcacatggcgttgtctcatttctgcaaggccattc 498

                                                                       
Query: 121 tctagtctttccttctaaagcattacttctcaaactctttctgctaacaaataccccacc 180
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 497 tctagtctttccttctaaagcattacttctcaaactctttctgttaacaaataccccacc 438

                                                                       
Query: 181 acacacgcaaagctgagcacgagtactttcctaaactaccatcaggatcaattattaaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 acacacgcaaagctgagcacgagtactttcctaaactaccatcaggatcaattattaaag 378

                                                                       
Query: 241 ccattcatttaaaagcttgcaaattatttgtcctttttaatgtttttgtaagttttagca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ccattcatttaaaagcttgcaaattatttgtcctttttaatgtttttgtaagttttagca 318

                                                    
Query: 301 gacatgaatttattatatgaaattgctatacaagtttcagg 341
           ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 317 gacatgaatttattatatgaaattgctatgcaagtttcagg 277


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 741
Length adjustment: 9
Effective length of query: 332
Effective length of database: 732
Effective search space:   243024
Effective search space used:   243024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)