Query= MSMg01no510_a12.b1 MSMg01no510_a12.b1 CHROMAT_FILE:
MSMg01no510_a12.b1 PHD_FILE: MSMg01no510_a12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:39:30 2005
(564 letters)
>mm_chr3_6020144_6021106
Length = 963
Score = 1025 bits (530), Expect = 0.0
Identities = 555/566 (98%), Gaps = 7/566 (1%)
Strand = Plus / Plus
Query: 1 accctgatacccaccagctcttctttgttatttctaaaataatactggaatgtaaattag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 accctgatacccaccagctcttctttgttatttctaaaataatactggaatgtaaattag 260
Query: 61 gacaaaggaatgtagatatttgtatggtggtgttcactcagacaccgtgtcccctgaatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gacaaaggaatgtagatatttgtatggtggtgttcactcagacaccgtgtcccctgaatg 320
Query: 121 gtattgtagccatgggaaacattttaaatctgaattgtaatttgctatttggaaggtata 180
|||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 321 gtattgtaaccatgggaaacattttaaatctgaattgtaatttgcaatttggaaggtata 380
Query: 181 gttaaagcagaaacaaaaactaaggggattaattataatttttactactatattgtcntt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 381 gttaaagcagaaacaaaaactaaggggattaattataatttttactactatattg-c--- 436
Query: 241 t---cccagaaatgtttttattatgtgattttaatgtaaaataatttgactttttaagaa 297
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 tggccccagaaatgtttttattatgtgattttaatgtaaaataatttgactttttaagaa 496
Query: 298 aaaggcagtacttattaggttcagtaattttcgagtaattgtatcattaaaataacaaag 357
|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 497 aaagccagtacttattaggtgcagtaattttcgagtaattgtatcattaaaataacaaag 556
Query: 358 ccaggttattatgaatttattcctgcaattctctctgtgccttacacagacatagtggca 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ccaggttattatgaatttattcctgcaattctctctgtgccttacacagacatagtggca 616
Query: 418 tgcaggcacatgtaagtatacacacacacacactcactcacacacacactatacatgtaa 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 tgcaggcacatgtaagtatacacacacacacactcactcacacacacactatacatgtaa 676
Query: 478 aaataatgaaactaatagattaaatgacaacccacatattgggaaagaatctttaccaac 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 aaataatgaaactaatagattaaatgacaacccacatattgggaaagaatctttaccaac 736
Query: 538 ccttttaatgatgaagggctaatatc 563
||||||||||||||||||||||||||
Sbjct: 737 ccttttaatgatgaagggctaatatc 762
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 963
Length adjustment: 10
Effective length of query: 554
Effective length of database: 953
Effective search space: 527962
Effective search space used: 527962
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no510_a12.g1 MSMg01no510_a12.g1 CHROMAT_FILE:
MSMg01no510_a12.g1 PHD_FILE: MSMg01no510_a12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:39:30 2005
(286 letters)
>mm_chr9_70323781_70324467
Length = 687
Score = 397 bits (205), Expect = e-115
Identities = 266/293 (90%), Gaps = 13/293 (4%)
Strand = Plus / Minus
Query: 1 tctcatctgngngatgattctcaaaaacaagagaaggacatgaatggcaaccagcaagaa 60
||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 487 tctcatctgtgtgatgattctcaaaaacaagagaaggacatgactggcaaccagcaagaa 428
Query: 61 caagaaaaaaagtgg---tgtgaggaaaatgcacaaaagccagcaggctggcccctcata 117
|||| |||||||||| |||||| |||| || |||||||||||||||||||||||||||
Sbjct: 427 caag-aaaaaagtggtgttgtgagaaaaaagcgcaaaagccagcaggctggcccctcata 369
Query: 118 tgtgcagaactgtgtcaaagaaagtcaggaaatcctagggcgcaggcaacagcttgagac 177
||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||
Sbjct: 368 tgtgcagaactgtgtcaaagaaaatcaggaaatcctagggcgcagacaacagctagagac 309
Query: 178 ttcgagtgataaggataatgactcttccttaagtgagtgtctgtcttctccctcatctag 237
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 accgagtgatgaggataatgactcttccttaagtgagtgtctgtcttctccctcatctag 249
Query: 238 tctccttttttttttg----ctctgatacaatgacttcagatgaggataaaga 286
||||| |||| | |||||||||| ||||||||||||||||||||||
Sbjct: 248 tctccatttt-----gggggctctgatacagtgacttcagatgaggataaaga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 687
Length adjustment: 9
Effective length of query: 277
Effective length of database: 678
Effective search space: 187806
Effective search space used: 187806
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
