Query= MSMg01no511_b23.b1 MSMg01no511_b23.b1 CHROMAT_FILE:
MSMg01no511_b23.b1 PHD_FILE: MSMg01no511_b23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:40:53 2005
(642 letters)
>mm_chr3_50800183_50801224
Length = 1042
Score = 1118 bits (578), Expect = 0.0
Identities = 632/668 (94%), Gaps = 29/668 (4%)
Strand = Plus / Plus
Query: 4 gaattctgcaattttactgaatccaatccattaaaatatgtctctatttcaaatatacat 63
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 gaattctgcaattttattgaatccaatccattaaaatatgtctctatttcaaatatacat 234
Query: 64 catcataaatttccaaatagccctctattgggctcaactatttttactgtaaagttgtat 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 catcataaatttccaaatagccctctattgggctcaactatttttactgtaaagttgtat 294
Query: 124 atctacatcacaatttataggtattttt-ctatcttttatttcataaaattatggcccta 182
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 295 atctacatcacaatttataggtatttttgctatcttttatttcataaaattatggcccta 354
Query: 183 taagctgaataaaaatcctgctatcctaaagttttcaatgttttcattcttcataaatac 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 taagctgaataaaaatcctgctatcctaaagttttcaatgttttcattcttcataaatac 414
Query: 243 ccaaagcttagcactgacaaattccattactaacttatcagcttgatttccaagtaaaga 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 ccaaagcttagcactgacaaattccattactaacttatcagcttgatttccaagtaaaga 474
Query: 303 agtttttaagggggctataaagatggctcagtgggtaagagcacccactgcacaagcatg 362
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 475 agtttttaagggggctacaaagatggctcagtgggtaagagcacccactgcacgagcatg 534
Query: 363 aaggcctaagttcaaatctcccctcatgcatgtaaaagtctgggtgtatttgtatacaca 422
||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 535 aagacctaagttcaaatctcccctcatgcatgtaaaagtctgggtgtgtttgtatacaca 594
Query: 423 cacac----------------------------tcatgggagatgctggctgctagtctc 454
||||| |||||||||||||||||||||||||||
Sbjct: 595 cacacacacacacacacacacacacacacacactcatgggagatgctggctgctagtctc 654
Query: 455 gagcttgatgagttacccttcctggggggattaaagcaaacagtgataaaacagggccct 514
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 gcgcttgatgagttacccttcctggggggattaaagcaaacagtgataaaacagggccct 714
Query: 515 tgatgtcctcctttagtctccatgggcacatagaccagaagggagttagtattgatgccc 574
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 tgatgtccttctttagtctccatgggcacatagaccagaagggagttagtattgatgccc 774
Query: 575 taattaactaattaagaaaaacaaaggcaatgagagaaaataggaagcggaattgaccca 634
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 taattaactaattaagaaaaacaaaggcaatgagagaaaataggaagcggaattgaccca 834
Query: 635 agtctgtg 642
||||||||
Sbjct: 835 agtctgtg 842
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1042
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1032
Effective search space: 652224
Effective search space used: 652224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no511_b23.g1 MSMg01no511_b23.g1 CHROMAT_FILE:
MSMg01no511_b23.g1 PHD_FILE: MSMg01no511_b23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:40:53 2005
(495 letters)
>mm_chr3_50963648_50964542
Length = 895
Score = 880 bits (455), Expect = 0.0
Identities = 484/495 (97%), Gaps = 4/495 (0%)
Strand = Plus / Minus
Query: 1 aaggccagactcggctatgtgagaccgtcttcatccacgagcgcgcatgcacacacacac 60
||||||||||||||||| |||||||||||||||||||||||||||| | |||||||||
Sbjct: 793 aaggccagactcggctacgtgagaccgtcttcatccacgagcgcgc--g--cacacacac 738
Query: 61 acacacacacacacacacacacacacacacacacacacacacgattcatactcactgtat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 acacacacacacacacacacacacacacacacacacacacacgattcatactcactgtat 678
Query: 121 ttgcataaaggaaggctgggagatacttgatgatctgattaaagtttaccttctggagaa 180
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 ttgcataaaggaaggctggaagatacttgatgatctgattaaagtttaccttctggagaa 618
Query: 181 cagactgaggataaggccgaataagttgtttcattctggccctgtagggttttttgtttg 240
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 cagactgaggataaggcagaataagttgtttcattctggccctgtagggttttttgtttg 558
Query: 241 tttgtttgtttttaatttaaaacctgcaaatgttttgcctatccaaaagcattgaaaaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 tttgtttgtttttaatttaaaacctgcaaatgttttgcctatccaaaagcattgaaaaag 498
Query: 301 atcaccagcacttccgatactctttcccctcctgcctgtctggaagtggcagttgcaaca 360
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 atcaccagcacttctgatactctttcccctcctgcctgtctggaagtggcagttgcaaca 438
Query: 361 cttctgtggactcatttatcatttatacagcgagcagtgtctctcgccttatgctggagg 420
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 437 cttctgtggactcatttatcatttatacagcgagcagtgtctctcgccttaggctggagg 378
Query: 421 gaacagcttaatgtgacgggaatgagcgcggctggaactcattcagccagacctcatttc 480
|||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 377 gaacagcttaatgtgaagggaatgagcgcggctggaactcagtcagccagacctcatttc 318
Query: 481 agatttggctccagc 495
|||||||||||||||
Sbjct: 317 agatttggctccagc 303
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 66
Number of extensions: 25
Number of successful extensions: 25
Number of sequences better than 10.0: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space: 429225
Effective search space used: 429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
