Query= MSMg01no511_f12.b1 MSMg01no511_f12.b1 CHROMAT_FILE:
MSMg01no511_f12.b1 PHD_FILE: MSMg01no511_f12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:11 2005
(606 letters)
>mm_chr3_44527829_44528833
Length = 1005
Score = 828 bits (428), Expect = 0.0
Identities = 440/444 (99%), Gaps = 1/444 (0%)
Strand = Plus / Minus
Query: 159 ttaaatttatgtttaattaaaaaagaactgtagggaacattgctatatggccaagaaaat 218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1005 ttaaatttatgtttaattaaaaaagaactgtagggaacattgctatatggccaagaaaat 946
Query: 219 gcatagaaatctgcagctgactgggataaggaggtaacctgcatgatgaggtagagacct 278
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 945 gcatagaaatctgcagctgactgggataaggaggtgacctgcatgatgaggtagagacct 886
Query: 279 gggataaaagaggcacccaagaatcaatgggggtaacagatgtgactcactacactgggg 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 885 gggataaaagaggcacccaagaatcaatgggggtaacagatgtgactcactacactgggg 826
Query: 339 atatgaaacctgaagaggccacctaataattggtcctcccatgattttagggttttgtgg 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 825 atatgaaacctgaagaggccacctaataattggtcctcccatgattttagggttttgtgg 766
Query: 399 ggaaattgtggaacctttagctgttagaatccttctagaagtatatcactgatcccccat 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 ggaaattgtggaacctttagctgttagaatccttctagaagtatatcactgatcccccat 706
Query: 459 cccagctttgggatgtgttcattgtcagttcacacccctgatccatttcaaattcagctt 518
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 705 cccagctttgggatgtgttcattgtcagttcacacccttgatccatttcaaattcagctt 646
Query: 519 ttcagtaaagatgtgatcacttagcaatcttgagctgaactccagttatattgactttgt 578
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct: 645 ttcagtaaagatgtgatcacttagc-atcttgagctgaaccccagttatattgactttgt 587
Query: 579 agctatccttggctctttcatgga 602
||||||||||||||||||||||||
Sbjct: 586 agctatccttggctctttcatgga 563
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1005
Length adjustment: 10
Effective length of query: 596
Effective length of database: 995
Effective search space: 593020
Effective search space used: 593020
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no511_f12.g1 MSMg01no511_f12.g1 CHROMAT_FILE:
MSMg01no511_f12.g1 PHD_FILE: MSMg01no511_f12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:11 2005
(527 letters)
>mm_chr3_44334801_44335727
Length = 927
Score = 1019 bits (527), Expect = 0.0
Identities = 527/527 (100%)
Strand = Plus / Plus
Query: 1 acatgagagaacaaaattggcatttaccattcttcatttggcttactgtatatgacaata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acatgagagaacaaaattggcatttaccattcttcatttggcttactgtatatgacaata 260
Query: 61 atttccaggttttcacttcccataaatcattttcttttttaaaagatgaataaaacatat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atttccaggttttcacttcccataaatcattttcttttttaaaagatgaataaaacatat 320
Query: 121 aatattttaaatttaaagaaaaatataatttctcttctactctgaaatgaatttttataa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatattttaaatttaaagaaaaatataatttctcttctactctgaaatgaatttttataa 380
Query: 181 tagaatagtgactttaagtccaaagaaaacattaatgaccaacatcagtaggcagcccta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagaatagtgactttaagtccaaagaaaacattaatgaccaacatcagtaggcagcccta 440
Query: 241 tcagagatattagttttccatttattattattttattattattatttgctaatcctttta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcagagatattagttttccatttattattattttattattattatttgctaatcctttta 500
Query: 301 aataatagttattatgctggaatcttcatttgatagttatatactgcacctgtgatttca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aataatagttattatgctggaatcttcatttgatagttatatactgcacctgtgatttca 560
Query: 361 aataccatactggactctctaagtatatataagttatattttaattaattaaaaacaagt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aataccatactggactctctaagtatatataagttatattttaattaattaaaaacaagt 620
Query: 421 gggtaaaaagaaaatattctacgaaaaaaacctaattgatttctaattatcatgcattta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gggtaaaaagaaaatattctacgaaaaaaacctaattgatttctaattatcatgcattta 680
Query: 481 ttttatgaaatagttttgaatataattgagttcagcctttattgatg 527
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttttatgaaatagttttgaatataattgagttcagcctttattgatg 727
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 927
Length adjustment: 10
Effective length of query: 517
Effective length of database: 917
Effective search space: 474089
Effective search space used: 474089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
