BAC Information

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BAC

Clone NameMSMg01-511K02
Chromosome3 (Build37)
Map Location 80,359,540 - 80,510,738
singlet/doubletdoublet
Overlap geneGria2
Upstream geneLOC667613, Ppid, Etfdh, 4930579G24Rik, Rxfp1, Tmem144, 1110032E23Rik, EG626797
Downstream geneGlrb, EG626841, Pdgfc, LOC229443
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-511K02.T7 (MSMg01no511_k02.b1)MSMg01-511K02.TJ (MSMg01no511_k02.g1)
ACCAG584780AG584781
length715732
length of high quality
(start - end)
350 (121 - 470)260 (76 - 335)
definitionCHROMAT_FILE: MSMg01no511_k02.b1 PHD_FILE: MSMg01no511_k02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:33 2005CHROMAT_FILE: MSMg01no511_k02.g1 PHD_FILE: MSMg01no511_k02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:33 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,359,540 - 80,359,889)(80,510,479 - 80,510,738)
sequence
ACTAATTXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCAGAGGATCCGCG
GTATTCAAAATATTTTCCAATTATCTGAGCTAACATAAAGTATCGAATGC
CTAAGTCAGAGTCAGTGGAATCCATTTTTCTAACAGGGATGAAGTAGAAT
TAATAATGCAAATATCAGTATTTATAGGGGGACAAGAAAAGTTGTTAGAC
TTCTGATGTCATTGACATCATTTCGTATGTCCTCTGTCCTCACCGGAAGC
TGATTGTGTATGAAGCTGAATCAGGGAGGATGTGATGTACACACCATCAA
AAACTATTTTGAAGATGTCATGATAGTAGGTGTCATGTGTCAACTTGACT
GGAGTTTAAGGGCTAACTGATGAAGTTTACTCTGGGGGTTTCCTAGAGGA
CATTTCTGATATGAAATTAACATGCCATGCGTTGAATATGTCTTCAGTAA
TTTAAGCGGGTCTCATTCAATTATTTGAAGCCCTGATAACACCGTGCTGA
TCATCCACAGGTGATAGGAAAACCCCCCTGTCTCACTCCCTTTGAGCTGG
GATATTAATTTTTGCCTTAAGGCTTCCTCATTGTCTAGCTTGTGACTGCA
GACTACTGTTAATTCCTTGCCATAGTTGGGCCCACCCCTTATATTCCCTC
TGTTTTCTTCACATATTCAGCCTAACTTCTGTATCCATCTATATTGTACT
TTACTCCAGAATTTG
CGATGATACGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACTATAAAGATGTCAGCAGCTGCCG
ACCATTTGTCCAAGCAAATTTAAGATGCTTAGAAGGCAAATTTTTACCGT
CGGTGTAAGCCTGTGAAATACCTGAACAATGTTCCTTGAATGTTGATCAT
GTGTTTCCCTGGTGAAATCATATACACCATGGAGAGGCTATAAAATGCAA
AAGGTTCCTATCATTCCATGCCTGCTTGGAGGGGTACCGTGTTTTTGCTG
CATATTCTCATTTTACAGTTATCTGTGTGTTCATCCTCAGACCTGTATAT
GGGAAAATGGGCGAGGTTAGATTTTTCCTACAGGGTCAACAACTTGTTAG
ACAACACTTCATTTGCACATATCTCATCTCTTTATTTCTCTTAACATCTT
TTCATGGAAATGGTGCGTCTGCGAGGTTATTTAAAAGCTTTAAATGTTAT
TCCTCCTGTACCAAAAATTTGATCTCTTTTATTTAGAAATGCACACTGAA
AAATAATATCTTGCTGATAATTCCTGTGTCCTGTTGAAGGATACCTACTC
TTACCACCTCGATTCCTATCATGCTATTATTATCTCTTGCTTTCAGTTCC
TTAATTTTTAACTATCCGCTTACATTTCTTTCAATTGCCTCCGTTCCACG
TTACAACATGCAATTAAAAATTTTCTTGTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no511_k02.b1 MSMg01no511_k02.b1 CHROMAT_FILE:
MSMg01no511_k02.b1 PHD_FILE: MSMg01no511_k02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:33 2005
         (350 letters)



>mm_chr3_80359340_80360089
          Length = 750

 Score =  576 bits (298), Expect = e-169
 Identities = 337/350 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccatttttctaacagggatgaagtagaattaataatgcaaatatcagtatttatagggg 60
           |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 tccatttttctaacagagatgaagtagaattaataatgcaaatatcagcatttatagggg 260

                                                                       
Query: 61  gacaagaaaagttgttagacttctgatgtcattgacatcatttcgtatgtcctctgtcct 120
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 261 gacaagaaaagttgttagacttctgatgtcattgacatcatttcgcatgtcctctgtcct 320

                                                                       
Query: 121 caccggaagctgattgtgtatgaagctgaatcagggaggatgtgatgtacacaccatcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 321 caccggaagctgattgtgtatgaagctgaatcagggaggatgtgatgcacacaccatcaa 380

                                                                       
Query: 181 aaactattttgaagatgtcatgatagtaggtgtcatgtgtcaacttgactggagtttaag 240
           ||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct: 381 aaactatttcgaagatgtcatgatagtaggtgtcatgtatcaacttgactggagattaag 440

                                                                       
Query: 241 ggctaactgatgaagtttactctgggggtttcctagaggacatttctgatatgaaattaa 300
           ||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||
Sbjct: 441 ggctaactgatgaagtttactctggaggttttcgagaggacatttctgatatgaaattaa 500

                                                             
Query: 301 catgccatgcgttgaatatgtcttcagtaatttaagcgggtctcattcaa 350
           ||||||||| |||||||||||||||||| ||||||| |||||||||||||
Sbjct: 501 catgccatgtgttgaatatgtcttcagtgatttaagtgggtctcattcaa 550


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 350
Length of database: 750
Length adjustment: 9
Effective length of query: 341
Effective length of database: 741
Effective search space:   252681
Effective search space used:   252681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no511_k02.g1 MSMg01no511_k02.g1 CHROMAT_FILE:
MSMg01no511_k02.g1 PHD_FILE: MSMg01no511_k02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:33 2005
         (260 letters)



>mm_chr3_80510279_80510938
          Length = 660

 Score =  487 bits (252), Expect = e-142
 Identities = 258/260 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actataaagatgtcagcagctgccgaccatttgtccaagcaaatttaagatgcttagaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 actataaagatgtcagcagctgccgaccatttgtccaagcaaatttaagatgcttagaag 401

                                                                       
Query: 61  gcaaatttttaccgtcggtgtaagcctgtgaaatacctgaacaatgttccttgaatgttg 120
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 gcaaatttttaccgtcggcgtaagcctgtgaaatacctgaacaatgttccttgaatgttg 341

                                                                       
Query: 121 atcatgtgtttccctggtgaaatcatatacaccatggagaggctataaaatgcaaaaggt 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 340 atcatgtgtttccctggtgaaatcatatacaccatggagaggctataaaatgcagaaggt 281

                                                                       
Query: 181 tcctatcattccatgcctgcttggaggggtaccgtgtttttgctgcatattctcatttta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 tcctatcattccatgcctgcttggaggggtaccgtgtttttgctgcatattctcatttta 221

                               
Query: 241 cagttatctgtgtgttcatc 260
           ||||||||||||||||||||
Sbjct: 220 cagttatctgtgtgttcatc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 260
Length of database: 660
Length adjustment: 9
Effective length of query: 251
Effective length of database: 651
Effective search space:   163401
Effective search space used:   163401
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)