Query= MSMg01no512_a02.b1 MSMg01no512_a02.b1 CHROMAT_FILE:
MSMg01no512_a02.b1 PHD_FILE: MSMg01no512_a02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:01 2005
(686 letters)
>mm_chr3_45598657_45599743
Length = 1087
Score = 1040 bits (538), Expect = 0.0
Identities = 577/590 (97%), Gaps = 1/590 (0%)
Strand = Plus / Minus
Query: 21 tttgagattttactcctctttcaggcaatatcacatatttttgtttgtttcaggcttttt 80
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 590 tttgagattttactcctctttcaggcagtatcacatatttttgtttgtttcaggcttttt 531
Query: 81 ttcctttgtttaattggtttgac-ttttacactatgtgagcattgggaaggaaggggtgt 139
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 530 ttcctttgtttaattggtttgactttttacactatgtgagcattgggaaggaaggggtgt 471
Query: 140 ttcaaggctatggcacttagtgccccagttttctgaaagatcatgcaacaatgatttttc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 ttcaaggctatggcacttagtgccccagttttctgaaagatcatgcaacaatgatttttc 411
Query: 200 tctcttcgttgttatgctctgcattaaacattgtggcttactttgatagtacataagtat 259
|||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 tctcctcattgttatgctctgcattaaacattgtggcttactttgatagtacataagtag 351
Query: 260 ttctgaaattcaggagcatccttgacactctcatttctatagacaccacctgtttcccag 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 ttctgaaattcaggagcatccttgacactctcatttctatagacaccacctgtttcccag 291
Query: 320 aatcaaatctctaaataattggatcttgggatagttaacttaatgttttaaataagatag 379
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct: 290 aatcaaatctctaaataattggatcttgggatagttaatttaatgttttaactaagatag 231
Query: 380 agggtggcactcaaatatttgattagtgatggtgttgtgaaatgtttttgtgacattagc 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 agggtggcactcaaatatttgattagtgatggtgttgtgaaatgtttttgtgacattagc 171
Query: 440 atttatatcaatgagctctcagtgaagtagattgtcctcaacaactgttggtggcgctca 499
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 170 atttatatcaatgagctctcagtgaagtagattgtcctcagcaactgttggtggcgctca 111
Query: 500 catatacagccttgatgataatgaagactcaactgcatggatgatatgagactgtcagac 559
|||||||||||||||||||||||||||||||| |||||| || |||||||||||||||||
Sbjct: 110 catatacagccttgatgataatgaagactcaattgcatgaatcatatgagactgtcagac 51
Query: 560 ctctggcttcatgaagacagcctcaggtgaatcattagcctgctagccaa 609
|||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 50 ctctagcttcatgaggacagcctcaggtgaatcattagcctgctagccaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1087
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1077
Effective search space: 728052
Effective search space used: 728052
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no512_a02.g1 MSMg01no512_a02.g1 CHROMAT_FILE:
MSMg01no512_a02.g1 PHD_FILE: MSMg01no512_a02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:01 2005
(653 letters)
>mm_chr3_45424799_45425851
Length = 1053
Score = 1218 bits (630), Expect = 0.0
Identities = 642/646 (99%)
Strand = Plus / Plus
Query: 8 aatgtgagttttaatatgcctgactctaaactagcaatgcatcactggcataaactttga 67
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 aatgtgggttttaatatgcctgactctaaactagcaatgcatcactggcataaactttga 267
Query: 68 tagaaagaggacttctgtcacttcttcaatactctcccaagtcaatgaactaaatcagga 127
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 tagaaggatgacttctgtcacttcttcaatactctcccaagtcaatgaactaaatcagga 327
Query: 128 acttattctagtctagatacatttaagacatcattaagaaaggcccacagagtaggacaa 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 acttattctagtctagatacatttaagacatcattaagaaaggcccacagagtaggacaa 387
Query: 188 gggtttgtgagttaaatggatggatggatatgttcagagagtactgaaattggtctttta 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 gggtttgtgagttaaatggatggatggatatgttcagagagtactgaaattggtctttta 447
Query: 248 cagttttatagcacacaccataaccatggcaactttaaaataaagacatttaaggataga 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 cagttttatagcacacaccataaccatggcaactttaaaataaagacatttaaggataga 507
Query: 308 taccagagaaatctgaaagggtacatgcagtataaatgcatctatgtgtggacagtacaa 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 taccagagaaatctgaaagggtacatgcagtataaatgcatctatgtgtggacagtacaa 567
Query: 368 cacacctagtcaagtgctacatgtttatgtaattatgaacacaaggaaggataaacatag 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 cacacctagtcaagtgctacatgtttatgtaattatgaacacaaggaaggataaacatag 627
Query: 428 tcttttctgtaagaggaaaaaggatgaattagggggacctggctcactggataagagtac 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 tcttttctgtaagaggaaaaaggatgaattagggggacctggctcactggataagagtac 687
Query: 488 tcactgtacatggatgaagaccttagtccaaacccccagcacccatgtaaatggcatgga 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 tcactgtacatggatgaagaccttagtccaaacccccagcacccatgtaaatggcatgga 747
Query: 548 tacatatgcctgttactccagtactattggggtgaccacagtaaaatccttcacttgatg 607
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 748 tacatatgcctgttactccagtactattggggtggccacagtaaaatccttcacttgatg 807
Query: 608 tctatcagcttaacctcaggttataaacctaggtgataacgaagtc 653
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 tctatcagcttaacctcaggttataaacctaggtgataacgaagtc 853
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space: 670649
Effective search space used: 670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
