BAC Information

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BAC

Clone NameMSMg01-512B05
Chromosome3 (Build37)
Map Location 149,945,072 - 150,017,243
singlet/doubletdoublet
Overlap genenone
Upstream geneEG381483, LOC100040620, LOC100040633
Downstream geneLOC100040455, LOC100040463, LOC623554
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-512B05.T7 (MSMg01no512_b05.b1)MSMg01-512B05.TJ (MSMg01no512_b05.g1)
ACCAG585120AG585121
length729729
length of high quality
(start - end)		631 (46 - 676)587 (75 - 661)
definitionCHROMAT_FILE: MSMg01no512_b05.b1 PHD_FILE: MSMg01no512_b05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:06 2005CHROMAT_FILE: MSMg01no512_b05.g1 PHD_FILE: MSMg01no512_b05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:06 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(150,016,617 - 150,017,243)(149,945,072 - 149,945,658)
sequence
CTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCACTTTTTAATAGCAAGTTATGAAAGAGTTGCTGTTTATAGAAC
TCCTTACTGTGGAGAGAAATGCATTCCCCTTTCAATGAATTTACTTATGA
AAAGAATACCCCTAACAAAAATGCCTTTATCTGTTGCTTTACAATGTATG
TCCAATGATATAATTTGATGATGGATTTCCCCAATAAAAGATATAAGTAC
CTTGGAGCATATTATATGAAAACATATGAAAATATGGTGCTGGAGAAATT
GCTCATTGGTAAAGAGTGCATACTGCTCCTATAGCAACCAGGAATTCAGA
GTTCTGCACTCACAGACTGCTCGCTATGAACTCCACTTAACTCAGAATCA
CATACCCTCCTTTGGTCCTACTTGGCACTGTTTGTACTTGTAAGAACCAA
CATTCATATACACATAGTTAGAGAGAAAAATAAAATATTTAACAAATGTT
AAAATAAGTCATTTTCATAAAAGAATAGCTGATGAAAATGAGAAGCTCAA
AACCTCCCAGTTAGAAATCTATAAAATATTTGCATTATTATTGCATAAGC
ATGAAATATGAATCTCAAGATATCACAAATGCAGGCAATCTGCACTTCTT
CCAGTTGGATCTATGAATTTTTACCAGTTGACTTTTGCCATAATGACAGT
CATTAAGCTTGCCAACAATGTCTCAATAA

CATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCATCTACCATCAATTTTTTTATCAT
TTATTGATGATCTTCTTAAACCATTCTTTTCCTATTTACAAAAGCAATGT
CTGTTAAGATTGACTAGGTTTTACACTCTTAAATTTCTTGAAAAAATCTG
GACTATGAATAATCTTTAGTATTTAATAAATTAGGTGACATTATTCTCCA
ATCGTAGATTTGGACATGGTCGTCAGAGAAAAGCACATTTCCAGACGACT
TTCAGTATAATATAGATATGTTTTTCTTATTAGATCACACTTCCTGGATC
TGAAGAAAATAAGAGAAAGTAATTCTCTGTGAAGTTAATATGGACCGTGA
GGGATTGCTCAATGATGAAACTATGAATTCTCTATAAAGAAAAACATATT
CAAGCACTTACACCCAAAAGAGGTATAAATAAAATCTTGGTGGAGAAATA
CATTTCATTGCATATAACGTTGATTATGGTACAGTGATGTATTGTTTTAA
AATTCACAACATCCACTCCGGCATAGATGCTCTAGTCTCACCAATTTTAC
TAAAACTGAAATGAAGACTCAAAAGTAATATTAACCTTTCCATACTAGGT
GATGAATAGATTAACTTCAAAGTTCAAACATTTTATATTTTCTTTTCTAA
TAAAACTATGATGTCTTGAATATTAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no512_b05.b1 MSMg01no512_b05.b1 CHROMAT_FILE:
MSMg01no512_b05.b1 PHD_FILE: MSMg01no512_b05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:06 2005
         (631 letters)



>mm_chr3_150016601_150017631
          Length = 1031

 Score = 1104 bits (571), Expect = 0.0
 Identities = 613/627 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcactttttaatagcaagttatgaaagagttgctgtttatagaactccttactg 64
           |||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 643 gaattctcacattttaataggaaattatgaaagagttgctgtttatagaactccttactg 584

                                                                       
Query: 65  tggagagaaatgcattcccctttcaatgaatttacttatgaaaagaatacccctaacaaa 124
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 tggagaaaaatgcattcccctttcaatgaatttacttatgaaaagaatacccctaacaaa 524

                                                                       
Query: 125 aatgcctttatctgttgctttacaatgtatgtccaatgatataatttgatgatggatttc 184
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 523 aatgcctttatctgttgctttacaatgtatgtctaatgatataatttgatgatggatttc 464

                                                                       
Query: 185 cccaataaaagatataagtaccttggagcatattatatgaaaacatatgaaaatatggtg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 cccaataaaagatataagtaccttggagcatattatatgaaaacatatgaaaatatggtg 404

                                                                       
Query: 245 ctggagaaattgctcattggtaaagagtgcatactgctcctatagcaaccaggaattcag 304
           |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 403 ctggagaaattgctcagtggtaaagagtgcatactgctcttatagcaaccaggaattcag 344

                                                                       
Query: 305 agttctgcactcacagactgctcgctatgaactccacttaactcagaatcacataccctc 364
           ||||||||||||||||||||||| |||||||||||| ||||||| |||||||||||||||
Sbjct: 343 agttctgcactcacagactgctcactatgaactccatttaactcggaatcacataccctc 284

                                                                       
Query: 365 ctttggtcctacttggcactgtttgtacttgtaagaaccaacattcatatacacatagtt 424
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 283 ctttggtcctacttggcactgtttgtacttgtaagaaccaacattcatatgcacatagtt 224

                                                                       
Query: 425 agagagaaaaataaaatatttaacaaatgttaaaataagtcattttcataaaagaatagc 484
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 agagagaaaactaaaatatttaacaaatgttaaaataagtcattttcataaaagaatagc 164

                                                                       
Query: 485 tgatgaaaatgagaagctcaaaacctcccagttagaaatctataaaatatttgcattatt 544
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163 tgatgaaaatgagaaactcaaaacctcccagttagaaatctataaaatatttgcattatt 104

                                                                       
Query: 545 attgcataagcatgaaatatgaatctcaagatatcacaaatgcaggcaatctgcacttct 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103 attgcataagcatgaaatatgaatctcaagatatcacaaatgcaggcaatctgcacttct 44

                                      
Query: 605 tccagttggatctatgaatttttacca 631
           |||||||||||||||| ||||||||||
Sbjct: 43  tccagttggatctatggatttttacca 17


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1031
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1021
Effective search space:   634041
Effective search space used:   634041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no512_b05.g1 MSMg01no512_b05.g1 CHROMAT_FILE:
MSMg01no512_b05.g1 PHD_FILE: MSMg01no512_b05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:06 2005
         (587 letters)



>mm_chr3_149944872_149945858
          Length = 987

 Score = 1050 bits (543), Expect = 0.0
 Identities = 576/587 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcatctaccatcaatttttttatcatttattgatgatcttcttaaaccattcttttccta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcatctaccatcaatttttttatcatttattgatgatcttcttaaaccattcttttccta 260

                                                                       
Query: 61  tttacaaaagcaatgtctgttaagattgactaggttttacactcttaaatttcttgaaaa 120
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttacaaaagcaatgtctgctaagattgactaggttttacactcttaaatttcttgaaaa 320

                                                                       
Query: 121 aatctggactatgaataatctttagtatttaataaattaggtgacattattctccaatcg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatctggactatgaataatctttagtatttaataaattaggtgacattattctccaatcg 380

                                                                       
Query: 181 tagatttggacatggtcgtcagagaaaagcacatttccagacgactttcagtataatata 240
           |||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||
Sbjct: 381 tagatttggacatggttgtcacagaaaagcacatttccagatgactttcagtataatata 440

                                                                       
Query: 241 gatatgtttttcttattagatcacacttcctggatctgaagaaaataagagaaagtaatt 300
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 441 gatatgtttttcttattagatcacacttcctggttctgaagaaaataagagaaagtaatt 500

                                                                       
Query: 301 ctctgtgaagttaatatggaccgtgagggattgctcaatgatgaaactatgaattctcta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctctgtgaagttaatatggaccgtgagggattgctcaatgatgaaactatgaattctcta 560

                                                                       
Query: 361 taaagaaaaacatattcaagcacttacacccaaaagaggtataaataaaatcttggtgga 420
           ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 561 taaaggaaaacatattcaagcacttacacccaaaagagttataaataaaatcttggtgga 620

                                                                       
Query: 421 gaaatacatttcattgcatataacgttgattatggtacagtgatgtattgttttaaaatt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaaatacatttcattgcatataacgttgattatggtacagtgatgtattgttttaaaatt 680

                                                                       
Query: 481 cacaacatccactccggcatagatgctctagtctcaccaattttactaaaactgaaatga 540
           | |||||||||||||  |||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 681 ctcaacatccactccaacatagatgctctggtctcaccaattttactaaaactgaaatga 740

                                                          
Query: 541 agactcaaaagtaatattaacctttccatactaggtgatgaatagat 587
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agactcaaaagtaatattaacctttccatactaggtgatgaatagat 787


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 987
Length adjustment: 10
Effective length of query: 577
Effective length of database: 977
Effective search space:   563729
Effective search space used:   563729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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