Query= MSMg01no512_b15.b1 MSMg01no512_b15.b1 CHROMAT_FILE:
MSMg01no512_b15.b1 PHD_FILE: MSMg01no512_b15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:08 2005
(330 letters)
>mm_chr3_5247144_5247873
Length = 730
Score = 613 bits (317), Expect = e-180
Identities = 320/321 (99%)
Strand = Plus / Minus
Query: 7 attcatcttctgcttgtgggatctaatgtgctttggcattacagctgtctttacaatcaa 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 attcatcttctgcttgtgggatctaatgtgctttggcattacagctgtctttacaatcaa 361
Query: 67 gtgtttatcataatgggtctttatcaatttgaagtcactctccaactggacctctaaggt 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 gtgtttatcataatgggtctttatcaatttgaagtcactctccaactggacctctaaggt 301
Query: 127 ctctaacatccagacgaaccctggaacttttaaaatggccctgcaggactaaggtggacc 186
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 300 ctctaacatccagacgaaccctggaactttgaaaatggccctgcaggactaaggtggacc 241
Query: 187 acacatgcttatagaaagaactgcatgaatttatacacacacgcacacacacacatacac 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 acacatgcttatagaaagaactgcatgaatttatacacacacgcacacacacacatacac 181
Query: 247 acacctatacgcatatgaagaattgtaagacagttttattaaataacctattctaagaaa 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 acacctatacgcatatgaagaattgtaagacagttttattaaataacctattctaagaaa 121
Query: 307 ataaacaaccaactaggtttc 327
|||||||||||||||||||||
Sbjct: 120 ataaacaaccaactaggtttc 100
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 730
Length adjustment: 9
Effective length of query: 321
Effective length of database: 721
Effective search space: 231441
Effective search space used: 231441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no512_b15.g1 MSMg01no512_b15.g1 CHROMAT_FILE:
MSMg01no512_b15.g1 PHD_FILE: MSMg01no512_b15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:09 2005
(544 letters)
>mm_chr3_5079113_5080056
Length = 944
Score = 1013 bits (524), Expect = 0.0
Identities = 539/544 (99%)
Strand = Plus / Plus
Query: 1 caccgcagatcaagacagacaagggtttttcatgatagttttgatgctgcctgttttctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caccgcagatcaagacagacaagggtttttcatgatagttttgatgctgcctgttttctt 260
Query: 61 aaaattaatttacttgtttacatccccaaatctgccctccttctggtcccccctcacaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaattaatttacttgtttacatccccaaatctgccctccttctggtcccccctcacaga 320
Query: 121 atcccttccctcatctcttcccctttgataagatatcttcccaccctggctcatcaactt 180
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 atcccttccctcatctcttcccctttgataagatatctttccaccctggctcatcaactt 380
Query: 181 tctgcagcattaggagcaacaagacaaggcagctcagtagaggaatggatttcagtcagg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctgcagcattaggagcaacaagacaaggcagctcagtagaggaatggatttcagtcagg 440
Query: 241 ttttagggaccgccccggaccagtttgaggagaatccacatggagactgagctgctcatc 300
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 441 ttttagggaccgccccggaccagtttgtggagaatccacatggagactgagctgctcatc 500
Query: 301 tccatatgtaccaggggactcagtctaacctgtgaatgttctttaattggtggttcagac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 501 tccatatgtaccaggggactcagtctaacctgtgaatgttctttaattggtggctcagac 560
Query: 361 tctgagagattttaggagtacaggttaattgactccattggtcttcctgtggagttccta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tctgagagattttaggagtacaggttaattgactccattggtcttcctgtggagttccta 620
Query: 421 tcccctatgtattttgaaatcccctgattttgaaatcagcccatttactttctttctttt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcccctatgtattttgaaatcccctgattttgaaatcagcccatttactttctttctttt 680
Query: 481 gtgttgtatttacctcatagcagagtaaaatccttataagtatttgtgcactcttccact 540
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtgttgcattcacctcatagcagagtaaaatccttataagtatttgtgcactcttccact 740
Query: 541 ccat 544
||||
Sbjct: 741 ccat 744
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 944
Length adjustment: 10
Effective length of query: 534
Effective length of database: 934
Effective search space: 498756
Effective search space used: 498756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
