Query= MSMg01no512_c08.b1 MSMg01no512_c08.b1 CHROMAT_FILE:
MSMg01no512_c08.b1 PHD_FILE: MSMg01no512_c08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:12 2005
(529 letters)
>mm_chr3_123143465_123144398
Length = 934
Score = 849 bits (439), Expect = 0.0
Identities = 504/537 (93%), Gaps = 22/537 (4%)
Strand = Plus / Plus
Query: 1 tgcctgctcagtgtctggttctcaggtcaggacttacagaaatgtagagtggacc--ata 58
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 212 tgcctgctcagtgtctggttctcaggtcaggacttacagaaatgtagagtggacctgtta 271
Query: 59 ttaccatatcactcagccaggtatattaggagaggtagac--atgctttatcaggaagcc 116
|||||||||||||| ||||||||||| | ||||||||||||||||||
Sbjct: 272 ttaccatatcactc-------------aggagaggtagcctgatgctttatcaggaagcc 318
Query: 117 aacgtctccgaatcctaccttcaaaccccacctccatcttaccagctccccagacagatg 176
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 agtgtctccgaatcctaccttcaaaccccacctccatcttaccagctccccagacagatg 378
Query: 177 tagacttttataaccacctgggtgatctccaaagtggtttcctacttcaggaaaacaagc 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tagacttttataaccacctgggtgatctccaaagtggtttcctacttcaggaaaacaagc 438
Query: 237 aggccatatctactcaggac----ttctcttccttcctttctcttcaaccggttcctaat 292
|||||| | | ||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct: 439 aggccaga-caactcaggacttctttctcttccttcctctctcttcaaccggttcctaat 497
Query: 293 ctcagctttatggttttgaaaacttcaaagatgaacagaaagaattacacgcaggaaatc 352
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ctcagctttatggttttgaagacttcaaagatgaacagaaagaattacacgcaggaaatc 557
Query: 353 acaccgactgatttattcctcaaacattaactcctctcctgggaccgaagtgtgacaaat 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 acaccgactgatttattcctcaaacattaactcctctcctgggaccgaagtgtgacaaat 617
Query: 413 ggctgtttctgcatcttcctgaagccagtccttgcgtatgggagaagaacggtggcagag 472
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 618 ggctgtttctgcatcttcctgaaaccagtccttgcgtatgggagaagaacggtggcagag 677
Query: 473 gagccactagcatcctcggaagtctaaaacgccaataaacaacagggacttgagcca 529
|||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct: 678 gagccactagcatcctcggacgtctaaaacaccaataaacaacagggacttgagcca 734
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 934
Length adjustment: 10
Effective length of query: 519
Effective length of database: 924
Effective search space: 479556
Effective search space used: 479556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no512_c08.g1 MSMg01no512_c08.g1 CHROMAT_FILE:
MSMg01no512_c08.g1 PHD_FILE: MSMg01no512_c08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:12 2005
(517 letters)
>mm_chr3_123306526_123307442
Length = 917
Score = 903 bits (467), Expect = 0.0
Identities = 506/519 (97%), Gaps = 4/519 (0%)
Strand = Plus / Minus
Query: 1 atgcattccttccatgagtctccctcatgaattagtaggacatggccttttcactgggca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 913 atgcattccttccatgagtctccctcatgaattagtaggacatggccttttcactggaca 854
Query: 61 ctttttatcctcacacagtaaggaatgaataccaaattagtgttctcaaccctggaacct 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 853 ctttttatcctcacacagtaaggaatgaataccaaattagtgttctcaaccctggaacat 794
Query: 121 ggttgttaaatgtgactctttgggtagacacagaggcctatgagcaacaagactcattct 180
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct: 793 ggttgttaaatgtgactctttgggtagacacagaggcctatgaacaacaagactcgttct 734
Query: 181 cactgtacacactggctatagggggcagcccaggggt-aggacctctcaccaatctaact 239
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 733 cactgtacacactggctatagggggcagcccaggggtaagg-cctctcaccaatctaact 675
Query: 240 gtacacacacacacacacacacacacacacacacacacacacacacacacactggcgagc 299
||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct: 674 gtatgcacacacacacacacacacacacacacacacacacacacacacacgctggccagc 615
Query: 300 agtcttcactggccaattcactgttaacacaattccttggtgttatactactgtgcatgg 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 614 agtcttcactggccaattcactgttaacacaattccttggtgttatactactgtgcgtgg 555
Query: 360 tcttgctgtctaaggctttcaccatttcccaagaactgtcagcaactacaaagattacag 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 tcttgctgtctaaggctttcaccatttcccaagaactgtcagcaactacaaagattacag 495
Query: 420 ttttatagccgcccacagctacaggaaccaggttcctgggggctgtatgggagaaattgt 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 ttttatagccgcccacagctacaggaaccaggttcctgggggctgtatgggagaaattgt 435
Query: 480 gagagaaataacgagctaaaacaaagtttgttt-atcaa 517
||||||||||||||||||||||||||||| ||| |||||
Sbjct: 434 gagagaaataacgagctaaaacaaagttt-tttgatcaa 397
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 63
Number of extensions: 20
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 917
Length adjustment: 10
Effective length of query: 507
Effective length of database: 907
Effective search space: 459849
Effective search space used: 459849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
