BAC Information

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BAC

Clone NameMSMg01-512C24
Chromosome3 (Build37)
Map Location 152,696,819 - 152,860,734
singlet/doubletdoublet
Overlap geneLOC100040750
Upstream geneLOC676548, Gipc2, Dnajb4, Fubp1, Nexn, C030011O14Rik, Usp33, Zzz3, Ak5, LOC100040705, Pigk, Rpl29-ps1, St6galnac5
Downstream geneSt6galnac3, EG545578, Asb17, Msh4, Rabggtb, Acadm, Slc44a5, LOC100040980
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-512C24.T7 (MSMg01no512_c24.b1)MSMg01-512C24.TJ (MSMg01no512_c24.g1)
ACCAG585206AG585207
length768775
length of high quality
(start - end)		600 (34 - 633)544 (68 - 611)
definitionCHROMAT_FILE: MSMg01no512_c24.b1 PHD_FILE: MSMg01no512_c24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:15 2005CHROMAT_FILE: MSMg01no512_c24.g1 PHD_FILE: MSMg01no512_c24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(152,696,819 - 152,697,413)(152,860,191 - 152,860,734)
sequence
GCGGCCGCTATACGACTCCTATTTCGAGAGGATCCGCGGAATTCTTGGTA
TTTGGGAGGTCTGGGGAATGTAAAATGACTCAGTAGTGGTCAGAAAGGTT
TTTCCATAGGTACTAGCATGGAAGTATAAACCATGTAGACATGATGTTGA
TTGTCTAATACCTCGACACTATGTAGGGTGCTCAGGTGTCTCATGTGACC
TCAGCCTCAGCACAACAAAGTAGGAGTGTCATATTGTCGATTTCAAGAAA
GGGGCAGATTTCCATACTGTCAGTTTCAGGAAAAGGGTGCAGTTACATGC
TGTCAGTCTCTGGAAAGGGTGGAGTTACACACTGTCAGTCCCAAGAAAGG
GGTGGGGTTACACACTGTCAGTCTCAGGAAAGGGGCGGAGTCCCATACTG
TCAATCTCAGGAAAGAGGTGGAATTACGCACTGTTTCAGGAAAGGGCAGA
TTTCCACCCTGTAATCTCAGGGAAGGGGTAGACTCTCACACTGTCAGTCT
CGGGGAAGGAGTGGAGTTCCATATTTTCAGCCTCAGGAAAGGGAAGGAGT
TCCACATTGTCACTATGGTGTAGCATAGCTTGGCCCAGGTGTAGTGGAGG
AAGGCAGATTGCTCTCATACACCTGGGTATCCGATCAGGCTGGGTGGCTG
GTTCCCTCATCCTTCGCTCATTAAAACAATTTACTGAGTGCCTGGGAAGT
GGCTGGTACTGTTCTAGAATAACTAAGCAAAGAATTGCCGCTGTGCTGCA
GCCTATTATTTAGTCTGG

TTTGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTTGGATGGGAACCTGCAGTGCCTGGTGTCACT
TGGTATATGTGGAGGACATGAGAGGGGCCTATTCTAGGATCCGTATCCAT
AATAAGGGATGCTCTGGTGGTACCCAGGAGTAAACTGTTCACTTTAACCA
GGGTGGGAGCGTCCCTATTTCTGTGTGCTGGGCTGTGATTCCTGACTATA
CCAGCCTTGGATGCACAGAACCAGCCAGCACCTTCCACTAGGCACCGTGT
ATTTGTCTACTCATAATTGAGAACTGCTTTCAGTAGCACCATTTTCCATG
TCCAGGAAAGCACTTGACAATCTGTATATTCTTCTAAAACTTTCCACACA
ATGCTCACCTTTCCCCCAGAACCATGACATCTTTTGTGAAATTTGCATAG
AATGGTCTTTTATCTTGAGTGGCAGCTTTACTTCAAATTGCTGCACTTTG
GCCTAGACATCTTTTGTGGAAGCTGATTGTGATGGCTCTGTTCCCTCCTG
AGGAAGGCGGGAAATGTCACACACTCTCTGATGGAGTAAAGGGCGCTAAT
GTTGGGAAAGGATTTAATGTCTTACTAATCAGTCTGTAATCACACAGCTA
TGAATGGCTGCTGAATATGGAAGAAAAAACATATAAACATTCTAAAGTGC
CATTTGATGTTCAGAGACTGAGTGATCCTGANCANGAACAGAGACAAGGC
CGATGTACGTATGCTCTAGAGAACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no512_c24.b1 MSMg01no512_c24.b1 CHROMAT_FILE:
MSMg01no512_c24.b1 PHD_FILE: MSMg01no512_c24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:15 2005
         (600 letters)



>mm_chr3_152696614_152697613
          Length = 1000

 Score = 1127 bits (583), Expect = 0.0
 Identities = 592/595 (99%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattcttggtatttgggaggtctggggaatgtaaaatgactcagtagtggtcagaaagg 65
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcttggtagttgggaggtctggggaatgtaaaatgactcagtagtggtcagaaagg 265

                                                                       
Query: 66  tttttccataggtactagcatggaagtataaaccatgtagacatgatgttgattgtctaa 125
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 266 tttttccataggtactagcatggaagtataaaccatgtagacatggtgttgattgtctaa 325

                                                                       
Query: 126 tacctcgacactatgtagggtgctcaggtgtctcatgtgacctcagcctcagcacaacaa 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tacctcgacactatgtagggtgctcaggtgtctcatgtgacctcagcctcagcacaacaa 385

                                                                       
Query: 186 agtaggagtgtcatattgtcgatttcaagaaaggggcagatttccatactgtcagtttca 245
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 386 agtaggagtgtcatattgtcgatttcaagaaaggggcggatttccatactgtcagtttca 445

                                                                       
Query: 246 ggaaaagggtgcagttacatgctgtcagtctctggaaagggtggagttacacactgtcag 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ggaaaagggtgcagttacatgctgtcagtctctggaaagggtggagttacacactgtcag 505

                                                                       
Query: 306 tcccaagaaaggggtggggttacacactgtcagtctcaggaaaggggcggagtcccatac 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 tcccaagaaaggggtggggttacacactgtcagtctcaggaaaggggcggagtcccatac 565

                                                                       
Query: 366 tgtcaatctcaggaaagaggtggaattacgcactgtttcaggaaagggcagatttccacc 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 tgtcaatctcaggaaagaggtggaattacgcactgtttcaggaaagggcagatttccacc 625

                                                                       
Query: 426 ctgtaatctcagggaaggggtagactctcacactgtcagtctcggggaaggagtggagtt 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 ctgtaatctcagggaaggggtagactctcacactgtcagtctcggggaaggagtggagtt 685

                                                                       
Query: 486 ccatattttcagcctcaggaaagggaaggagttccacattgtcactatggtgtagcatag 545
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 ccatattttcagcctcaggaaagggaaggagttccacattgtcactatggtgtagcatag 745

                                                                  
Query: 546 cttggcccaggtgtagtggaggaaggcagattgctctcatacacctgggtatccg 600
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 cttggcccaggtgtagtggaggaaggcagattgctctcatacacctgggtatccg 800


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1000
Length adjustment: 10
Effective length of query: 590
Effective length of database: 990
Effective search space:   584100
Effective search space used:   584100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no512_c24.g1 MSMg01no512_c24.g1 CHROMAT_FILE:
MSMg01no512_c24.g1 PHD_FILE: MSMg01no512_c24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:15 2005
         (544 letters)



>mm_chr3_152859991_152860934
          Length = 944

 Score =  975 bits (504), Expect = 0.0
 Identities = 534/544 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttggatgggaacctgcagtgcctggtgtcacttggtatatgtggaggacatgagagggg 60
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tttggataggaacctgcagtgcctggtgtcacttggtatatgtggaggacatgagagggg 685

                                                                       
Query: 61  cctattctaggatccgtatccataataagggatgctctggtggtacccaggagtaaactg 120
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 cctattctaggatctgtatccataataagggatgctctggtggtacccaggagtaaactg 625

                                                                       
Query: 121 ttcactttaaccagggtgggagcgtccctatttctgtgtgctgggctgtgattcctgact 180
           ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct: 624 ttcactttaaccagggtgggagcatccctatttctgtgcgctgggctgtgattcctgact 565

                                                                       
Query: 181 ataccagccttggatgcacagaaccagccagcaccttccactaggcaccgtgtatttgtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ataccagccttggatgcacagaaccagccagcaccttccactaggcaccgtgtatttgtc 505

                                                                       
Query: 241 tactcataattgagaactgctttcagtagcaccattttccatgtccaggaaagcacttga 300
           ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct: 504 tactcataattgagaactgctttcagtagcaccatttcccatgtccagggaagcacttga 445

                                                                       
Query: 301 caatctgtatattcttctaaaactttccacacaatgctcacctttcccccagaaccatga 360
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 caatctgaatattcttctaaaactttccacacaatgctcacctttcccccagaaccatga 385

                                                                       
Query: 361 catcttttgtgaaatttgcatagaatggtcttttatcttgagtggcagctttacttcaaa 420
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 catcttttgtggaatttgcatagaatggtcttttatcttgagtggcagctttacttcaaa 325

                                                                       
Query: 421 ttgctgcactttggcctagacatcttttgtggaagctgattgtgatggctctgttccctc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 324 ttgctgcactttggcctagacatcttttgtggaagctgattgtgatggctctgctccctc 265

                                                                       
Query: 481 ctgaggaaggcgggaaatgtcacacactctctgatggagtaaagggcgctaatgttggga 540
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 264 ctgaggaaggcgggaaatgtcacacactctctggtggagtaaagggcgctaatgttggga 205

               
Query: 541 aagg 544
           ||||
Sbjct: 204 aagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 944
Length adjustment: 10
Effective length of query: 534
Effective length of database: 934
Effective search space:   498756
Effective search space used:   498756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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