BAC Information

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BAC

Clone NameMSMg01-512F16
Chromosome3 (Build37)
Map Location 50,004,581 - 50,005,159
singlet/doubletsinglet
Overlap genenone
Upstream gene4932443G14, LOC545519, LOC676568, LOC666247, LOC100039579, LOC100039587, LOC638779, Pcdh18
Downstream geneLOC100039628, LOC639469, Slc7a11, EG621304, LOC100039667
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-512F16.T7 (MSMg01no512_f16.b1)MSMg01-512F16.TJ (MSMg01no512_f16.g1)
ACCAG585333AG585334
length767785
length of high quality
(start - end)
667 (36 - 702)579 (68 - 646)
definitionCHROMAT_FILE: MSMg01no512_f16.b1 PHD_FILE: MSMg01no512_f16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:28 2005CHROMAT_FILE: MSMg01no512_f16.g1 PHD_FILE: MSMg01no512_f16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCATC
TGAGGAATACCGAATGGCAGAGAAGCTGGTCTCTTCTTAATCATTGAAAA
TTTCTTAGCTCCAGCTAACCAGCATCAATTGTGCCTTCTATTTTTTGACT
CTAAAGCAGAGTCATATGGCCAAAGCTGTGGAGTTCCATGCCCCCCCCCC
GTTGTTTTATTACATTATCACCAACTTTCTGTTTTATAACATCTTCACTG
CCTAAGCTTGGCTGTCCTACTGTCAAACATTCAGTTTCCAGAAAGGCCCA
ATAGCAGGTCAAGAGTTGGTTTTCAAAGGAAGAATAGTTGTTTGCAAATG
ATGGTAGAGCTTTGCTCCAAAATTCCAATGGTCTCCTCTGTGATTCACTT
ATAGGGGGCCTGACAGAGGCTCCAAACAGCATCTCTATCTGCCACTGCCA
CCTCAAGTACCATCAGGTCTACTGGATCATATGGTCCAAGTGGTAGAACA
ACCTGCACAGCATCCTGGACCTGTTGAAGAACCTTCTCCTGTTCCAGGGC
ACACACAAAGCTAGCAGCTTTCCGAGTCACTTGGTAAATGGGCCTGAGTA
AAACTCTAAAGCTAGGAATGTACTGTTGTCAGAATGCAAATAGACCCACT
AAACATTGTGCTTCTTTCTTGGTGGTGGGAGGGGCCAGATGCAATAACTT
ATCTTTCACATTAGAAGGAGTATCTTTGCANGCCCCACACCACTGGACTT
CTAGAATTTCACTGAGG
GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCCAAGATGAGAACAGAAAAGGGAGCCTACAGTG
TCACAGGCAAGGAACAACTGCTCAATCTATATCTGGTGACTCTTTGTAAT
GTACAAACACTCTTATATCCCATTATTTGTGCAGCTATGGTTTAACTATT
ATTTTTGCACTACCAGCTCCTGCTTAGGTTCAAGAGTTTCTTTCAGTTTT
CATTCTTCCACTGCATTTTCTTATCTCCGTCTCTACCACTGAAAGTCCTC
AACTGCCAGAATGCATGGCTACAAATTAAGGTTGTTTTTTTTAAAGGATT
TCATTTGCCAATAAAAATGTGCCCCCCGAGATTCCTATTTCTTGCTTATC
AAGACCCATGACTCCCTTTATTGCCACACCAAGGACTGCTTCAAAGACAA
GCCCCTGAGGTTTTATGGGCACAGATCTCAGTTAATCCAAGCTTTGAAAA
TACGCAATTTAGAAAAATAGTATTCAAATTTGCACTGAGTAATATTTTAT
TAATATGGAGGAAATACATTTTCTTCTCATTCGTTTTCTAATTAAATGGA
AGCTTACATTTGAATATAGATAAACTCTGTTTGGCTCATGCTGCTTAAAT
TCCTGCAAAAATAATCACATTCTAGCTTTGCAAAGACACAAATTGGCACC
TGACATTATTTTCTTACTTAACTATGTTGAGGAAGGACAAACTTGCACCA
TTTGCTCATTTCTATTTTAAATTTAGTATTTAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no512_f16.g1 MSMg01no512_f16.g1 CHROMAT_FILE:
MSMg01no512_f16.g1 PHD_FILE: MSMg01no512_f16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:28 2005
         (579 letters)



>mm_chr3_50004381_50005359
          Length = 979

 Score = 1120 bits (579), Expect = 0.0
 Identities = 579/579 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccaagatgagaacagaaaagggagcctacagtgtcacaggcaaggaacaactgctcaatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccaagatgagaacagaaaagggagcctacagtgtcacaggcaaggaacaactgctcaatc 260

                                                                       
Query: 61  tatatctggtgactctttgtaatgtacaaacactcttatatcccattatttgtgcagcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatatctggtgactctttgtaatgtacaaacactcttatatcccattatttgtgcagcta 320

                                                                       
Query: 121 tggtttaactattatttttgcactaccagctcctgcttaggttcaagagtttctttcagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggtttaactattatttttgcactaccagctcctgcttaggttcaagagtttctttcagt 380

                                                                       
Query: 181 tttcattcttccactgcattttcttatctccgtctctaccactgaaagtcctcaactgcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttcattcttccactgcattttcttatctccgtctctaccactgaaagtcctcaactgcc 440

                                                                       
Query: 241 agaatgcatggctacaaattaaggttgttttttttaaaggatttcatttgccaataaaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agaatgcatggctacaaattaaggttgttttttttaaaggatttcatttgccaataaaaa 500

                                                                       
Query: 301 tgtgccccccgagattcctatttcttgcttatcaagacccatgactccctttattgccac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtgccccccgagattcctatttcttgcttatcaagacccatgactccctttattgccac 560

                                                                       
Query: 361 accaaggactgcttcaaagacaagcccctgaggttttatgggcacagatctcagttaatc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 accaaggactgcttcaaagacaagcccctgaggttttatgggcacagatctcagttaatc 620

                                                                       
Query: 421 caagctttgaaaatacgcaatttagaaaaatagtattcaaatttgcactgagtaatattt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 caagctttgaaaatacgcaatttagaaaaatagtattcaaatttgcactgagtaatattt 680

                                                                       
Query: 481 tattaatatggaggaaatacattttcttctcattcgttttctaattaaatggaagcttac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tattaatatggaggaaatacattttcttctcattcgttttctaattaaatggaagcttac 740

                                                  
Query: 541 atttgaatatagataaactctgtttggctcatgctgctt 579
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 741 atttgaatatagataaactctgtttggctcatgctgctt 779


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 979
Length adjustment: 10
Effective length of query: 569
Effective length of database: 969
Effective search space:   551361
Effective search space used:   551361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)