Query= MSMg01no512_h01.b1 MSMg01no512_h01.b1 CHROMAT_FILE:
MSMg01no512_h01.b1 PHD_FILE: MSMg01no512_h01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:35 2005
(502 letters)
>mm_chr3_80983277_80984177
Length = 901
Score = 919 bits (475), Expect = 0.0
Identities = 493/499 (98%), Gaps = 2/499 (0%)
Strand = Plus / Plus
Query: 5 gaattcattgattttatcaggtgaagaaaa-ttccagttgactctcaaggaagcctttaa 63
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 204 gaattcattgattttatcaggtgaagaaaaattccagttgactctcaaggaagcctttaa 263
Query: 64 aatttatttattgattgattgattgattgactgattgattgcttaggacaaagcaacatg 123
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aatttatttatttattgattgattgattgactgattgattgcttaggacaaagcaacatg 323
Query: 124 ctctttggaatgaacctatacattgatgctgtgaggaagtcctcagtggaagaatatgac 183
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctctttggaatgaacctatacatagatgctgtgaggaagtcctcagtggaagaatatgac 383
Query: 184 caatattctctaaatttttaaatcttaacaattgcctcacatttcaacattatcctacca 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 caatattctctaaatttttaaatcttaacaattgcctcacatttcaacattatcctacca 443
Query: 244 aattatcttaagcagtgactatttacatagaacttgagtttcatgtggacaaagaataga 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aattatcttaagcagtgactatttacatagaacttgagtttcatgtggacaaagaataga 503
Query: 304 gaaaatggtagtggtcttacagtttttggtaggactggaaacttatagaccactacaaga 363
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 504 gaaaatggtagtggtcttacagtttttggtaggactggaaacttagagaccactacaaga 563
Query: 364 aatggttgtctatagtcatcagaagcacttgtcaaatgactagattcttattaaagtgga 423
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 564 aatggttgtctatagtcatcagaagcacttgtcaaatgactagattcttattaaagtgca 623
Query: 424 ttatggtttttttgtgcacttaaaggattcagagggtgacagtattttactgcatcaatg 483
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ttatggtttttt-gtgcacttaaaggattcagagggtgacagtattttactgcatcaatg 682
Query: 484 atattatacagttgctgca 502
|||||||||||||||||||
Sbjct: 683 atattatacagttgctgca 701
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 901
Length adjustment: 10
Effective length of query: 492
Effective length of database: 891
Effective search space: 438372
Effective search space used: 438372
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no512_h01.g1 MSMg01no512_h01.g1 CHROMAT_FILE:
MSMg01no512_h01.g1 PHD_FILE: MSMg01no512_h01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:35 2005
(508 letters)
>mm_chr3_81123232_81124140
Length = 909
Score = 702 bits (363), Expect = 0.0
Identities = 375/379 (98%), Gaps = 1/379 (0%)
Strand = Plus / Minus
Query: 131 catttatatttcttccccttttaatggtagaggcactgagctcatccatatgtcactata 190
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 909 catttatatttcttccccctttaatggtagaggcactgagctcatccatatgtcactata 850
Query: 191 gtattgaagatgtttgtgcaaccaacagctttagaaagacagagacaatgcctcatgctt 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 849 gtattgaagatgtttgtgcaaccaacagctttagaaagacagagacaatgcctcatgctt 790
Query: 251 cgcttccctccccttcctttgttctcctttctcttcccttccattctctctcctcccttc 310
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 789 cgcttccctccccttcctttgttctcctttcccttcccttccattctctctcctcccttc 730
Query: 311 catctcctctcctccccttctgattttcactctctgtctctcttgtgttctggaatccat 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 catctcctctcctccccttctgattttcactctctgtctctcttgtgttctggaatccat 670
Query: 371 gtttctcgttggattccttaaatatagtcacttttagca-ttttttctctagtctaagtt 429
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 669 gtttctcgttggattccttaaatatagtcacttttagcatttttttctctagtctaagtt 610
Query: 430 ttcttaccatattcttttcttttgaagcgtataaatttatgttgtcattcttattatagt 489
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 609 ttcttaccatattcttttcttttgaagtgtataaatttatgttgtcattcttattatagt 550
Query: 490 tgtgtgggctaaaatgcaa 508
|||||||||||||||||||
Sbjct: 549 tgtgtgggctaaaatgcaa 531
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 909
Length adjustment: 10
Effective length of query: 498
Effective length of database: 899
Effective search space: 447702
Effective search space used: 447702
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
