BAC Information

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BAC

Clone NameMSMg01-512K13
Chromosome3 (Build37)
Map Location 8,534,052 - 8,534,657
singlet/doubletsinglet
Overlap geneStmn2
Upstream gene3110050N22Rik, Il7, LOC620822, LOC633072, LOC545500, LOC620966
Downstream geneHey1, LOC100039504, Mrps28, Tpd52, LOC100041389, LOC667886, Zbtb10, Zfp704
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-512K13.T7 (MSMg01no512_k13.b1)MSMg01-512K13.TJ (MSMg01no512_k13.g1)
ACCAG585567AG585568
length7601,414
length of high quality
(start - end)		629 (35 - 663)---
definitionCHROMAT_FILE: MSMg01no512_k13.b1 PHD_FILE: MSMg01no512_k13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:53 2005CHROMAT_FILE: MSMg01no512_k13.g1 PHD_FILE: MSMg01no512_k13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACTAGA
CTAACGCACCTATTTGTAAACATTAGTAGTTAATAATGTTTACCAACCCA
TCACTGTAAAGGAATATAAGAAATCACCTATTAACTCCCACATTCTTGCA
AAGATGCATTCAACTCTACCTGGTCTTAGGATATGGTAAAAATATTAACA
TACATTGATTCCAAAATGCAAGAAAAGACATGATTGTGAATGGATGTAAT
ACTAACAGAAAATAAGCACATTTCTCATGGTACTTCATATTTGCTGGGAA
GTCCTTTGTTGCTACTTTTAAAACCATAAAATTATTTGTATTCCAGTATA
TCAAACCACACCTAATTCTCCTATCAAACCCACCCCATGAGCCTCAGCTT
GGTCACATTTTACATGAAAAATCTCCTCTTTAAAACCCTATTCAGAGAGA
CCTTTTACCTTTCCTTCTGTGTTATTGGAAACCTTTGTCCCAAACACAGT
TATTTTCTAGCAATTCATTCATAAAGTTTTGTTTGCCCTCTTTGTTTCCT
TTGCACTACACACTTTCTAAGTCATGCCACACCACATCACCTCCTGAACT
TCCAGTATCTGTTTCTTGATGTCTCCTTCACAAAAAAAAAAAAAAACAAA
CAAATAACGAAGTATTGGCAGAGACAGTCCTAGAGAAATGACTTAGTAGA
TAAATGTGTTTGTTGCGCAGGTTCAAGGACCTGAGTTCAAATTCCCATAG
TCCCTAGTAG

AGGCTGTGAACATCGATNGTGTGTCTTCAACGTGTGGTTCCGCTCGTCGT
GTCGTGCGGGGGGAAGCGGTTCTACGGCTCGCTGCGCTCCTCTCCGGCTT
CGTGCTGTCTATTGTCTTCCGCGTTGACGAAACGTGTGAACGCAAACTTG
ATCGGCGTTCGTGGTACGAAGTCGGTCAGGGAGCGGGCAATAGAGAGTGT
CACGAAATAGAGATTGCGGCGTTCCGCCGTCGTATCGATACGTACTAAAC
TTCTATAATTTCACGACGTCAGTCCGTCACCAACCATTACCAACGTCCGA
GAGATAAGTGAGCGGACTGTGCGACACCAACTGAATAACAGCACACAACT
CTGCATGATGTATTTTACGTCAGGGTGTGCGCTCGAGCGCGGGATATAGA
GGGAGTGTGTAGGGTGTAGGGAGAGGTGGATAAAGCTATGAGAGAGCGGA
TGTCTATATAGCTACCTCAAGCACTTGTGCGAGGGCGCAGCTCGTGGGAT
GCGGGTGTTGTGCGAGTTGTTGTTCGAATACGAGCGGACGTAGGTGCTCC
TCCGGCGACGCCGCTCCACTCTGCGAATAGTATTGTTGGGTGTTCGTTAA
GTAGCGTCGGTGCTATCGTACGGGCGCACCGCGCCTGGTTTAATGTTTGT
GTGTGCGGATCGCTACGGAGCGGCGCCGCACACATTATTGTATTAATTCT
ATCTTCCATAATAACCGATCCCNCCCATCTATAGTATGAACTCTATATTA
TCACGTACAAGCAGGATGGTTCGTCTGTCTGGCGACCGCACGAGATAGTG
ACAGATATAGACCGTGTAGCTCGCCGCACCGGTATCATATATCCCGTGTG
ATCCGCGAACTTACTCGCATGGTGTTCTTCGACCGCGCCTTATGATATTA
ATGACATATAGTGCCTACGCTCTCATATATTTTGATAAATACACGCCGTG
TCGCTGCGGCGCCTATATATATCCTCGCACGCGCCGCTCCGCTCGTCTTA
TTCTTATTATTTACAACGTAGTAGCGTCGCGCATATACGGCTACGCGCGA
ATGCAATAATGTAGTAAATGCGAGAGATGTACGGGTCTAGATACGAGTGA
GAGTGGGAGAGATATGGATAGGGTGAGATATAGTCGGTAGCGTATCGCGA
GAGATGTTGTGCGGCCGCTCACGTATATGATATATATATAAGTCTCAGAC
ATCTCGCGCGGCNCGCGTGCCCCGGTCGCCTGTGTATACGGTTATGTAAN
CGTAGAGATAGTAGGCGGTACGAATGAGTGGCGCGCATGCGACACGGATT
AGAATGAAGTGCGACAATATGACCGTGACTATTCTGATAGACAGTTACAT
TATGACCCAGATNACCACGATACGTATCATCGCGGCGTTACGAATCAATA
TATATATTCAATAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no512_k13.b1 MSMg01no512_k13.b1 CHROMAT_FILE:
MSMg01no512_k13.b1 PHD_FILE: MSMg01no512_k13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:53 2005
         (629 letters)



>mm_chr3_8533848_8534876
          Length = 1029

 Score = 1125 bits (582), Expect = 0.0
 Identities = 600/606 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactagactaacgcacctatttgtaaacattagtagttaataatgtttaccaacc 64
           ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactagacaaatgcacctatttgtaaacattagtagttaataatgtttaccaacc 264

                                                                       
Query: 65  catcactgtaaaggaatataagaaatcacctattaactcccacattcttgcaaagatgca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 catcactgtaaaggaatataagaaatcacctattaactcccacattcttgcaaagatgca 324

                                                                       
Query: 125 ttcaactctacctggtcttaggatatggtaaaaatattaacatacattgattccaaaatg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttcaactctacctggtcttaggatatggtaaaaatattaacatacattgattccaaaatg 384

                                                                       
Query: 185 caagaaaagacatgattgtgaatggatgtaatactaacagaaaataagcacatttctcat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 caagaaaagacatgattgtgaatggatgtaatactaacagaaaataagcacatttctcat 444

                                                                       
Query: 245 ggtacttcatatttgctgggaagtcctttgttgctacttttaaaaccataaaattatttg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ggtacttcatatttgctgggaagtcctttgttgctacttttaaaaccataaaattatttg 504

                                                                       
Query: 305 tattccagtatatcaaaccacacctaattctcctatcaaacccaccccatgagcctcagc 364
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tactccagtatatcaaaccacacctaattctcctatcaaacccaccccatgagcctcagc 564

                                                                       
Query: 365 ttggtcacattttacatgaaaaatctcctctttaaaaccctattcagagagaccttttac 424
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 565 ttggtcacattttacatgaaaaatctcccctttaaaaccctattcagagagaccttttac 624

                                                                       
Query: 425 ctttccttctgtgttattggaaacctttgtcccaaacacagttattttctagcaattcat 484
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ctttccttctgtggtattggaaacctttgtcccaaacacagttattttctagcaattcat 684

                                                                       
Query: 485 tcataaagttttgtttgccctctttgtttcctttgcactacacactttctaagtcatgcc 544
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tcataaggttttgtttgccctctttgtttcctttgcactacacactttctaagtcatgcc 744

                                                                       
Query: 545 acaccacatcacctcctgaacttccagtatctgtttcttgatgtctccttcacaaaaaaa 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 acaccacatcacctcctgaacttccagtatctgtttcttgatgtctccttcacaaaaaaa 804

                 
Query: 605 aaaaaa 610
           ||||||
Sbjct: 805 aaaaaa 810


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1029
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1019
Effective search space:   630761
Effective search space used:   630761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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