Query= MSMg01no512_m17.b1 MSMg01no512_m17.b1 CHROMAT_FILE:
MSMg01no512_m17.b1 PHD_FILE: MSMg01no512_m17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:04 2005
(615 letters)
>mm_chr3_155850587_155851601
Length = 1015
Score = 1031 bits (533), Expect = 0.0
Identities = 600/643 (93%), Gaps = 32/643 (4%)
Strand = Plus / Plus
Query: 5 gaattccaggtttatctgtccattgcactgacctttctgctcctcagaggcaggaatccc 64
||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 173 gaattccaggtacatctgtccattgcactgacctttctgctcctcagaggcaggagtccc 232
Query: 65 tcttatctgtcataaaagcacaggactctttttttctagtttatcttctaatgttttact 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 tcttatctgtcataaaagcacaggactctttttttctagtttatcttctaatgttttact 292
Query: 125 ggtacccactctgttagtcactgcccttcaaatctagggagttggtttctgctctgtcct 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 ggtacccactctgttagtcactgcccttcaaatctagggagttggtttctgctctgtcct 352
Query: 185 gtagattttgaaacagccctttttgttgtttatagttcttgaagagtaaatccatctcta 244
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct: 353 gtagattttgaaacagccctttttgttgtttatagttcttgaagattaaatctatctcta 412
Query: 245 ttatctcattcctgagttctttgtccttccattattgtcagctttctaggtagggtctta 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 ttatctcattcctgagttctttgtccttccattattgtcagctttctaggtagggtctta 472
Query: 305 tgtggagacacactgttcttagtaggg--------------------------------g 332
||||||||||||||||||||||||||| |
Sbjct: 473 tgtggagacacactgttcttagtagggtctcatgtggaaacacactgtccttagtagggg 532
Query: 333 ctcatgtggggacacactctccttagtggagtctcctgtggagactcagtgttagtaggg 392
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 533 ctcatgtggggacacactctccttagtggagtctcctgtggagcctcagtgttagtaggg 592
Query: 393 tctcatgtggaggcatactgtccttagtcggctctcatatggagacacactgtccttatt 452
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 593 tctcatgtggaggcatactgtccttagttggttctcatatggagacacactgtccttatt 652
Query: 453 gtcatactacaattttaaaagtaaatgagtatcatcaattgtagaattttctccatgtga 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 gtcatactacaattttaaaagtaaatgagtatcatcaattgtagaattttctccatgtga 712
Query: 513 aaattaaattcaatttcaatgtgaatttgcattgggtagatttccattgcctttcttcct 572
||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 713 aaactaaattcagtttcaatgtgaatttgcattgggtagatttccattgtctttcttcct 772
Query: 573 gaggcttctacccaatgcataaacaaagttcccttcctttgag 615
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 gaggcttctacccaatgcataaacaaagttcccttcctttgag 815
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1015
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1005
Effective search space: 608025
Effective search space used: 608025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no512_m17.g1 MSMg01no512_m17.g1 CHROMAT_FILE:
MSMg01no512_m17.g1 PHD_FILE: MSMg01no512_m17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:04 2005
(577 letters)
>mm_chr3_156013404_156014380
Length = 977
Score = 1071 bits (554), Expect = 0.0
Identities = 572/578 (98%), Gaps = 2/578 (0%)
Strand = Plus / Minus
Query: 1 aagagagaggaactgtcctatgagtacttgaggccatcttaaactgaattaatctcccac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 aagagagaggaactgtcctatgagtacttgaggccatcttaaactgaattaatctcccac 718
Query: 61 actggacccaacagaacaaaattctatattgtcttacaacagtggcaaagcttaattaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 actggacccaacagaacaaaattctatattgtcttacaacagtggcaaagcttaattaca 658
Query: 121 caaggctctgtaaaagctgagtaattaggctgtgtccgggcaaccactgctatctcttag 180
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 657 caaggctctgtaaaagctgagtaattaggctgtgtccgggcaaccaccgctatctcttag 598
Query: 181 tcccactttctgtctgtgtcacagaagggagaacccggcacccgttttggttctgtggct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 tcccactttctgtctgtgtcacagaagggagaacccggcacccgttttggttctgtggct 538
Query: 241 gtctgatacttaaatttgatttgttctgttttaacttttatgtgcaccattactcaaatg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 gtctgatacttaaatttgatttgttctgttttaacttttatgtgcaccattactcaaatg 478
Query: 301 aactctactaaattgttttcttaagaattttccacctaacaatgcattaaggaattaaca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 aactctactaaattgttttcttaagaattttccacctaacaatgcattaaggaattaaca 418
Query: 361 atcattatgaaaataatgaatagctactattattacaatataaaaaaacccataaccaaa 420
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 atcattatgaagataatgaatagctactattattacaatataaaaaaacccataaccaaa 358
Query: 421 tttgttctttccctacatactggtatcttttgctcataaatattctatagtatcagagaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 tttgttctttccctacatactggtatcttttgctcataaatattctatagtatcagagaa 298
Query: 481 acaatcattgcctgccttgagtcagctgtatagaaataatct-ttcttccatgtagcatc 539
|||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||
Sbjct: 297 acaatcattgcctgccttgagtcagctgtatagaaataatctctttttc-atgtagcatc 239
Query: 540 ctgccatataatagggcagtttaattaaactttctgtc 577
|||||||||||| |||||||||||||||||||||||||
Sbjct: 238 ctgccatataatggggcagtttaattaaactttctgtc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 977
Length adjustment: 10
Effective length of query: 567
Effective length of database: 967
Effective search space: 548289
Effective search space used: 548289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
