Query= MSMg01no512_n21.b1 MSMg01no512_n21.b1 CHROMAT_FILE:
MSMg01no512_n21.b1 PHD_FILE: MSMg01no512_n21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:10 2005
(656 letters)
>mm_chr3_100783405_100784460
Length = 1056
Score = 1025 bits (530), Expect = 0.0
Identities = 619/652 (94%), Gaps = 9/652 (1%)
Strand = Plus / Minus
Query: 5 gaattcttgatataatcaacgaacgtttttcccgtatttaccatacatgaatgttcttca 64
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 921 gaattcttgagataatcaacgaacgtttttcccgtatttaccatacatgaatgttcttca 862
Query: 65 agtctcagaacatttttcaatgaagaaaagttatttaagtgctataggcctggtatgttt 124
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 agactcagaacatttttcaatgaagaaaagttatttaagtgctataggcctggtatgttt 802
Query: 125 tattgtataagcatacacacacac-acacacacacacacacactgtgtaatcttaaagca 183
||||||||||||| |||| | ||| |||||||||||||||||||||||||||||||||||
Sbjct: 801 tattgtataagcacacacgcgcacaacacacacacacacacactgtgtaatcttaaagca 742
Query: 184 gcatcagttgaatgaagcgagctcaatttctccacctgtcacttagccctgctccagctc 243
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gcatcagttgaatgaagtgagctcaatttctccacctgtcacttagccctgctccagctc 682
Query: 244 ttccatgagaaacaagcaatgactgaagtggcaggcatagtgtcatcatgaaaaagttta 303
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttccatgagaaacaagcaatgcctgaagtggcaggcatagtgtcatcatgaaaaagttta 622
Query: 304 ggaatgcagaggcattgcttaaggatgcgtgcccagctctgggtagggacagagagccag 363
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 621 agaatgcagaggcattgcttaaggatgcgtgcagagctctgggtagggacagagagccag 562
Query: 364 gctgtaaccccgcccaccaccacctcccaggcatccagggatgctgctttcatctgccct 423
||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 561 gctgtgaccctgcccaccaccacctcccaggcatccagggacactgctttcatctgccct 502
Query: 424 gctctgaagaagtgacctgagtgagggacagggagtaaacaagcaggggtcaaagaggaa 483
|||||||||||||| |||||||||||| | |||||| |||||||||| ||||||||||||
Sbjct: 501 gctctgaagaagtgtcctgagtgaggggcggggagtgaacaagcaggagtcaaagaggaa 442
Query: 484 tggaagagaagacacaggggtagtgagctcatagggtgagaaaggaggaataacaggagg 543
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggaagagaagacacaggggtagtgagctcatagggtgagaaaggaggaataacaggaga 382
Query: 544 cagcccacagaggggacacacacacacatacttacacacacccacacataca--catgca 601
||||||||||||||| |||||||||||| |||||||||||| ||||||||| |||
Sbjct: 381 cagcccacagaggggccacacacacacacacttacacacac--acacatacatacat--- 327
Query: 602 cacatatacacagacacactacacacacacacacacatacacacacacacac 653
|||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 326 -acatatacacagacacactacacacacacatacacacacacacacacacac 276
Score = 60.7 bits (31), Expect = 4e-13
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 136 catacacacacacacacacacacacacacac 166
|||||||||||||||||||||||||||||||
Sbjct: 298 catacacacacacacacacacacacacacac 268
Score = 54.9 bits (28), Expect = 2e-11
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 139 acacacacacacacacacacacacacac 166
||||||||||||||||||||||||||||
Sbjct: 277 acacacacacacacacacacacacacac 250
Score = 54.9 bits (28), Expect = 2e-11
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 139 acacacacacacacacacacacacacac 166
||||||||||||||||||||||||||||
Sbjct: 279 acacacacacacacacacacacacacac 252
Score = 54.9 bits (28), Expect = 2e-11
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 139 acacacacacacacacacacacacacac 166
||||||||||||||||||||||||||||
Sbjct: 281 acacacacacacacacacacacacacac 254
Score = 54.9 bits (28), Expect = 2e-11
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 139 acacacacacacacacacacacacacac 166
||||||||||||||||||||||||||||
Sbjct: 283 acacacacacacacacacacacacacac 256
Score = 54.9 bits (28), Expect = 2e-11
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 139 acacacacacacacacacacacacacac 166
||||||||||||||||||||||||||||
Sbjct: 285 acacacacacacacacacacacacacac 258
Score = 54.9 bits (28), Expect = 2e-11
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 139 acacacacacacacacacacacacacac 166
||||||||||||||||||||||||||||
Sbjct: 287 acacacacacacacacacacacacacac 260
Score = 54.9 bits (28), Expect = 2e-11
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 139 acacacacacacacacacacacacacac 166
||||||||||||||||||||||||||||
Sbjct: 289 acacacacacacacacacacacacacac 262
Score = 54.9 bits (28), Expect = 2e-11
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 139 acacacacacacacacacacacacacac 166
||||||||||||||||||||||||||||
Sbjct: 291 acacacacacacacacacacacacacac 264
Score = 54.9 bits (28), Expect = 2e-11
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 139 acacacacacacacacacacacacacac 166
||||||||||||||||||||||||||||
Sbjct: 293 acacacacacacacacacacacacacac 266
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 115
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 11
Length of query: 656
Length of database: 1056
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1046
Effective search space: 675716
Effective search space used: 675716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no512_n21.g1 MSMg01no512_n21.g1 CHROMAT_FILE:
MSMg01no512_n21.g1 PHD_FILE: MSMg01no512_n21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:10 2005
(594 letters)
>mm_chr3_100660249_100661242
Length = 994
Score = 1073 bits (555), Expect = 0.0
Identities = 590/613 (96%), Gaps = 20/613 (3%)
Strand = Plus / Plus
Query: 1 atgagggcagctatgggctggctacccaggcaggtgcctgaggctgagacagactttgga 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 183 atgagggcagctatgggctggctacccaggcaggcgcctgaggctgagacagactttgga 242
Query: 61 tggcttttgaaaatccacacggaggttgatggctcttctaagcagaaaaagagcaaaag- 119
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 tggcttttgaaaatccacacggaggttgatggctcttctaagcagaaaaagagcaaaagg 302
Query: 120 -------gaacaaaccgttctggtgggttccaggagagaaaggagaggaaaagagcttgg 172
|||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 aggcagtgaacaaaccggtctggtgggttccaggagagaaaggagaggaaaagagcttgg 362
Query: 173 ggcatttaaaaatggatttaaactctagcttcagtttaaacttggagatagtggaaggga 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 ggcatttaaaaatggatttaaactctagcttcagtttaaacttggagatagtggaaggga 422
Query: 233 taaaacataaactaattttacagtttagtgatacagctaatatttaaacattagcaggct 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 taaaacataaactaattttacagtttagtgatacagctaatatttaaacattagcaggct 482
Query: 293 taagttgtttatctggctcttcttgacaaccctgtggaggaaattttagatgtggcatgg 352
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 483 taagttgtttatctggctctt-ttgacaaccctgtggaggaaattttagatgtggcatgg 541
Query: 353 gtattggaggaccacatggctcaactctacatcttgggctcttgggagcctcagttagga 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 gtattggaggaccacatggctcaactctacatcttgggctcttgggagcctcagttagga 601
Query: 413 agaaagctagctctcttgaagggttgacagaggagaggcatagcagtaccctcccccc-- 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 agaaagctagctctcttgaagggttgacagaggagaggcatagcagtaccctcccccccc 661
Query: 471 ---------gtttcttcagttccagccatgatagcccagccaaaccatgctcctgcctac 521
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 cccccccccgtttcttcagttccagccatgatagcccagccaaaccatgctcctgcctac 721
Query: 522 actcgtggctgagccaaggaataaataagataaaaagggcaaggtgacctgtggagggac 581
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 actagtggctgagccaaggaataaataagataaaaagggcaaggtgacctgtggagggac 781
Query: 582 tgtgagcaaacag 594
|||||||||||||
Sbjct: 782 tgtgagcaaacag 794
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 994
Length adjustment: 10
Effective length of query: 584
Effective length of database: 984
Effective search space: 574656
Effective search space used: 574656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
