BAC Information

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BAC

Clone NameMSMg01-512O22
Chromosome3 (Build37)
Map Location 156,401,386 - 156,401,944
singlet/doubletsinglet
Overlap geneNegr1
Upstream geneEG668902, LOC624519, LOC100040901, 4930570G19Rik, LOC100041152
Downstream geneLOC668853, LOC546818, Zranb2, Ptger3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-512O22.T7 (MSMg01no512_o22.b1)MSMg01-512O22.TJ (MSMg01no512_o22.g1)
ACCAG585777AG585778
length7761,509
length of high quality
(start - end)		561 (37 - 597)---
definitionCHROMAT_FILE: MSMg01no512_o22.b1 PHD_FILE: MSMg01no512_o22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:43:15 2005CHROMAT_FILE: MSMg01no512_o22.g1 PHD_FILE: MSMg01no512_o22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:43:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACTA
ACTACTGGCAAATATTGGCACCTAAATAATTATTTCAAAGGTGAAACAAC
AATGGTCTATGATCAGAATTTCATCATTTAACAATTAAAACTTAAAGATA
AATTAAATCAATAAATGGTTGGTTAATACTTTGAAATAATGATTTTGCTT
ATAGAAACCACCATATTTACTAACAAACATAGATGAATAGTTTACCAACA
GTTAAAGAGTTAACCTAACTAATCACCCCTGCTTCATGTATTGTTGACGG
GCATAGATTATCTGTCTGCAATGAGGAGAAATACTAACTAAGCATTTTAC
ATGGTGCTGGACAAACAATGCATATAATGACTCTCCTAACAAAACATGCC
ACAAACCTGCAGCCTAACTCCCTTCCTGACATCATTGTTCACTCTGTGTT
GGGAAGCCTTTCCCAGGACTCCTCAAAGTGAAGTCCTGGAGCCAAGGAAA
ATGGAGTCCGATTAGCATGAACTGCTTCCATGTTTGTATCTCAGCCCATT
GTAGCAACACTGAAATTTCTGTAGAACAGACCTTTGAGTACTTCCAGCCA
AGTATGAGGAATACATGTTTCAGAATGATCCAATCACCTCATGATCGTGC
ATATATCTTTTCATATGTTCCTCAGCAGTTCTGGAAGACTACCCTCTCTC
TGGATAGGCTTTAAAACTAGAAGATTTCAGCACCGNTCTTTTTTATTGNT
TTTGGCCATCAAAATNTTTTATTAAN

AAATCGCGTCCGCGCTCTCCGAACCTGCCTGCCCGTCTTCTTCCCTACGC
TCAAGCACACTAGCCTATGCCCGCTCTGTACGAGCGCGACGACAACGCGT
CACATCACGACAAGACACATATCACAGCGACGTAGACGAGAATAATAGAG
ACACGAGCGACGGCGGCCCGCCGTAGGTGACCGTTTCAAAACAAAGAGAA
ATATACCCGCGTGAGAGCGTACAGTGTTGTTTGTGCAAGAATCGGCGTCA
TAAATTACGTGGAAAAGATATGAGAGGGTCGTCGCTCAGCATGAGACGAA
TATCTTCTGCCCGACTTCTCTTCTTACTTACTATTCGCCCACTTTTTTCG
TCGTCTCTTCGCGTTGTAAACCCTCGTCACTACCCGATACCGCGTATCTA
TCACCCCTTCCGTCCCCTATGAGCTGTCGTCTCNTTCACTCTCAATCACA
CTTTTCTTCTTTCGTGTGCGTGCGTTCAGCGCGCCTGCGTTCCACTTTCA
CACCATCTCATTTCATCCTCCGTATGTTCGTTGCGCTGCGCGTGTGACTC
GCTAGCGTCGTCGCGCTGATCTTGTCTACGTCAGAGGGTGGTGGGCGCGC
GCGCATCTGTGGCGTGCGGTGGATCGCTCTGCAGCGTTTCTCGTATTTTA
CATTTTTCGGGTGTGATTACACTTGCGCACGGTCGCCGTGTATAACTATA
TTCCGCTCCTTCGCCGTCAACAACTCCACGTCCTACTTATTGTATATTTA
TTACATACAGCTAACTGTGCAATGCAATGAGAGGTCGCGAGAGTACGACG
CGCAGGAGCCGTCGCGGAACGTCCGTGTCGCCGTGTCAAGAACCGATGCA
GCGCTTGAACACCGCGAGATTTATGTATCTAGTGACCGCCCCTATACGAT
GATGTAATTTGAGTACGATAANTNTGATCGATACTCGCGCACTATTCTCG
ANAGTCGCGATGCACATAGTCGACGACTAGTGTAGGTTCCTGAATCGCGT
GTTCGACCCACTCGTTGATCGGGTAGCATATGTGGTTTCGGTACGGGCCT
CTCTTCTCACATCTGTTACTATTGTGTTGTCGCCCGCTCACCTATACTTA
ATATGATCGCGGTTGGCCGAGACCGTAGCGCTTCGGTGTTGTGTACCGAG
AGTATACGCGCGGTCTAATAGTATGCGCTCGCGTGCTCATGACGCTGTCG
TACACTTGGTGGCGACNTCATACGTACGCAGCGCAGTCACGATTTCACTG
ACTATGAGTTCACCGGCATGTCGCGACTATATCGCTTGCCATCACCACCG
GAANCTATACTGCTATTTATCTGCGCATAGCAATAACAACGTCACTNGTT
ATTATAATAGCCGTCTATATAGCTGGCGNTGCCGACCATACCAAATGCGC
AGACGCGTACGCTAGCAGATGTATACAGTGATGTATTCTACACGTTCACA
CATATAGATATAGTATCGACTTTATGTCACACACAATCACACCGCCGCTA
GCGGTATAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no512_o22.b1 MSMg01no512_o22.b1 CHROMAT_FILE:
MSMg01no512_o22.b1 PHD_FILE: MSMg01no512_o22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:15 2005
         (561 letters)



>mm_chr3_156401183_156402144
          Length = 962

 Score = 1019 bits (527), Expect = 0.0
 Identities = 551/559 (98%), Gaps = 1/559 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcactaactactggcaaatattggcacctaaataattatttcaaaggtgaaacaa 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 ggaattcactaactactggcaaatattggcacctaaataattatttcaaaggtgaaacaa 703

                                                                       
Query: 64  caatggtctatgatcagaatttcatcatttaacaattaaaacttaaagataaattaaatc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 caatggtctatgatcagaatttcatcatttaacaattaaaacttaaagataaattaaatc 643

                                                                       
Query: 124 aataaatggttggttaatactttgaaataatgattttgcttatagaaaccaccatattta 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 aataaatggttggttaatactttgaaataatgattttgcttatagaaaccaccatattta 583

                                                                       
Query: 184 ctaacaaacatagatgaatagtttaccaacagttaaagagttaacctaactaatcacccc 243
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 582 ctaacaaacatagatgaatagtttaccaacagttaaagagttaacctaactaattacccc 523

                                                                       
Query: 244 tgcttcatgtattgttgacgggcatagattatctgtctgcaatgaggagaaatactaact 303
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 522 tgcttcatgtattgttgacgggcatagagtatctgtctgcaatgaggagaaatactaact 463

                                                                       
Query: 304 aagca-ttttacatggtgctggacaaacaatgcatataatgactctcctaacaaaacatg 362
           ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 462 aagcaattttacatggtgctggacaaaccatgcatataatgactctcctaacaaaacatg 403

                                                                       
Query: 363 ccacaaacctgcagcctaactcccttcctgacatcattgttcactctgtgttgggaagcc 422
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 cctcaaacctgcagcctaactcccttcctgacatcattgttcactctgtgttgggaagcc 343

                                                                       
Query: 423 tttcccaggactcctcaaagtgaagtcctggagccaaggaaaatggagtccgattagcat 482
           |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 342 tttcccaggactcctcaaagtgaagtcctggagccaaggaaaatggagtctggttagcat 283

                                                                       
Query: 483 gaactgcttccatgtttgtatctcagcccattgtagcaacactgaaatttctgtagaaca 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 gaactgcttccatgtttgtatctcagcccattgtagcaacactgaaatttctgtagaaca 223

                              
Query: 543 gacctttgagtacttccag 561
           ||||||||| |||||||||
Sbjct: 222 gacctttgaatacttccag 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 962
Length adjustment: 10
Effective length of query: 551
Effective length of database: 952
Effective search space:   524552
Effective search space used:   524552
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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