AATXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAAAGAGGATCCGCGGAA
TTCTTGTTTCCATATAGCTTAGGTCTGTAGTATAGACAGTTACATTCTAG
AATCTGAATTACTGATAGGAAACAGATGCTAAAGGACTCAGGAATTATCT
TGAGATAATGTAACTTGTCTAAATACTTACTGTGGTTATACAAGTGTGTA
CATCGGTTCTGGAAGATACTGACTGATTCTAATTCCCCAAGTTGATGCAA
CCTATAATTATGTCACAAGTGTCTTAATAAGGAATTATATATGTCAGGTT
GCCTGGTGGTCAGGTCCATGATATGTTTTAATTTTTAAGAAGACCCAGCC
CACTCTGAGCAGCACCATTTACTAGACAGTGTCTCCAGAATGTTATAAGA
AAAAAGAAAGCATTCTATGAGCAAGGACATAAATAAGCAAGCAGGACATC
ATGTATTTGCTTTTTCAGCTCTTGGTTGAGGATGTGATGTAATTAGTGTT
TTATTTCTTGTTTTGCCTTCCTATGATACACTACAATCTAACATTGTAAG
TTAAGTAAATGTTCTCTCCTTAAGATTATTTCTCATACCATTTCACCATT
TTGAAAGAAATGAAATTAGAACATCAGTTTAACATCTCTGACCTTAATGT
TCAAGTATATGTTTAATACTAGCATCTGAAATTTCAGTATTTGTGTATGT
TTGACTTTGCGTTTTGCTCATGATTCAA

TAGGTTATGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTTTAGTGTGTTTGAACATTGAACTTG
AATTGTAACACTATTTTTTTACTCTCTTTTCCACCCCAATAAATATGAAC
ATAACTCAAAGACAATATGTTTCGTAACCGAAAATCATCCAGATACTTTA
ATTAGTATATGAATTTTGAAAGACTGCATTTGCATGAGTGAAGTCATTAA
AACTATAACGTGTTCATTACATACATTGTGTTTGGTGGATTGTCCATAAT
AAAAACCAACAAACCTTGCTACATTAAATAAACCTGTATTAATTAAAATC
GATTATTCTAACTTAAATTAAGCTGCTATAAAAATACTACATTCCCTTTG
CAATCTGGAAGTATTCTTACTCTCTAATGTACAGGGTTCATAACTACTGA
CCTGTAGCTCCTATAGTTCAGTTCCTGATAGATGTTTTGCAATGCAGAAT
ATAGACTCCAGTACCAGAGCACATTCCAGCCCACAGTACTAATGTGACAA
CCTTGAATCAGAGCTTGTAAAGTAACTCTTTCTTTTGTTTGTGTTCTGAA
GGGTCTCAAAGGAGAGAGAGGAGAGAAAGGAGAAGCTGGGCCCCCTGGTG
CTGCAGGTCCTGCTGGTATTAAGGGGCCACCAGGCGATGATGGGCCTAAG
GGGAACCCGGTGAGTTTGTC

Query= MSMg01no512_p03.b1 MSMg01no512_p03.b1 CHROMAT_FILE:
MSMg01no512_p03.b1 PHD_FILE: MSMg01no512_p03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:16 2005
         (545 letters)



>mm_chr3_114043795_114044739
          Length = 945

 Score =  582 bits (301), Expect = e-170
 Identities = 337/349 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttaggtctgtagtatagacagttacattctagaatctgaattactgataggaaacagat 60
           |||| ||||||||||||||||||||| ||||||||||||||  |||||||||||||||||
Sbjct: 349 cttaagtctgtagtatagacagttactttctagaatctgaaggactgataggaaacagat 290

                                                                       
Query: 61  gctaaaggactcaggaattatcttgagataatgtaacttgtctaaatacttactgtggtt 120
           ||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct: 289 gctaaaggactcaggaattatcttgagataatgtaacttgtctaactacttattgtggtt 230

                                                                       
Query: 121 atacaagtgtgtacatcggttctggaagatactgactgattctaattccccaagttgatg 180
           ||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||||
Sbjct: 229 atacaagtgtgtacatcagttctggaagatattgactgattctaaatccccaagttgatg 170

                                                                       
Query: 181 caacctataattatgtcacaagtgtcttaataaggaattatatatgtcaggttgcctggt 240
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 caacttataattatgtcacaagtgtcttaataaggaattatatatgtcaggttgcctggt 110

                                                                       
Query: 241 ggtcaggtccatgatatgttttaatttttaagaagacccagcccactctgagcagcacca 300
           |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 109 ggtcaggtacatgatatgttttaacttttaagaagacccagcccactctgagcagcacca 50

                                                            
Query: 301 tttactagacagtgtctccagaatgttataagaaaaaagaaagcattct 349
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49  tttactagacagtgtctccagaatgttataagaaaaaagaaagcattct 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 945
Length adjustment: 10
Effective length of query: 535
Effective length of database: 935
Effective search space:   500225
Effective search space used:   500225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no512_p03.g1 MSMg01no512_p03.g1 CHROMAT_FILE:
MSMg01no512_p03.g1 PHD_FILE: MSMg01no512_p03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:16 2005
         (596 letters)



>mm_chr3_113887685_113888680
          Length = 996

 Score = 1152 bits (596), Expect = 0.0
 Identities = 596/596 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttttagtgtgtttgaacattgaacttgaattgtaacactatttttttactctcttttcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttttagtgtgtttgaacattgaacttgaattgtaacactatttttttactctcttttcc 260

                                                                       
Query: 61  accccaataaatatgaacataactcaaagacaatatgtttcgtaaccgaaaatcatccag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 accccaataaatatgaacataactcaaagacaatatgtttcgtaaccgaaaatcatccag 320

                                                                       
Query: 121 atactttaattagtatatgaattttgaaagactgcatttgcatgagtgaagtcattaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atactttaattagtatatgaattttgaaagactgcatttgcatgagtgaagtcattaaaa 380

                                                                       
Query: 181 ctataacgtgttcattacatacattgtgtttggtggattgtccataataaaaaccaacaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctataacgtgttcattacatacattgtgtttggtggattgtccataataaaaaccaacaa 440

                                                                       
Query: 241 accttgctacattaaataaacctgtattaattaaaatcgattattctaacttaaattaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 accttgctacattaaataaacctgtattaattaaaatcgattattctaacttaaattaag 500

                                                                       
Query: 301 ctgctataaaaatactacattccctttgcaatctggaagtattcttactctctaatgtac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgctataaaaatactacattccctttgcaatctggaagtattcttactctctaatgtac 560

                                                                       
Query: 361 agggttcataactactgacctgtagctcctatagttcagttcctgatagatgttttgcaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agggttcataactactgacctgtagctcctatagttcagttcctgatagatgttttgcaa 620

                                                                       
Query: 421 tgcagaatatagactccagtaccagagcacattccagcccacagtactaatgtgacaacc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgcagaatatagactccagtaccagagcacattccagcccacagtactaatgtgacaacc 680

                                                                       
Query: 481 ttgaatcagagcttgtaaagtaactctttcttttgtttgtgttctgaagggtctcaaagg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttgaatcagagcttgtaaagtaactctttcttttgtttgtgttctgaagggtctcaaagg 740

                                                                   
Query: 541 agagagaggagagaaaggagaagctgggccccctggtgctgcaggtcctgctggta 596
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agagagaggagagaaaggagaagctgggccccctggtgctgcaggtcctgctggta 796


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 996
Length adjustment: 10
Effective length of query: 586
Effective length of database: 986
Effective search space:   577796
Effective search space used:   577796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)